Factsheet for TraesCS3D01G247900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G276600.1	Wheat	cytosol, plasma membrane, plastid	84.78	95.45
TraesCS3A01G247900.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	92.86	90.33
HORVU3Hr1G067610.2	Barley	mitochondrion	76.4	70.89
EES03523	Sorghum	cytosol	52.8	61.37
Os01t0715500-00	Rice	cytosol, mitochondrion, plasma membrane	38.51	59.33
GSMUA_Achr7P00060_001	Banana	cytosol	50.0	58.55
GSMUA_Achr7P23900_001	Banana	cytosol, unclear	50.0	58.55
TraesCS5D01G196100.1	Wheat	mitochondrion	49.38	57.82
TraesCS1D01G361900.1	Wheat	golgi	50.0	55.9
GSMUA_Achr3P20500_001	Banana	cytosol	47.2	55.27
Zm00001d043661_P001	Maize	cytosol	46.58	54.15
TraesCS3D01G213400.1	Wheat	cytosol	44.72	52.36
TraesCS4D01G258900.1	Wheat	cytosol	34.47	40.36
TraesCS4D01G331900.1	Wheat	nucleus	32.3	37.96
KRH56957	Soybean	cytosol	26.09	34.29
KRH03426	Soybean	cytosol	25.78	33.88
KRH63406	Soybean	cytosol	26.09	33.87
VIT_17s0000g05690.t01	Wine grape	cytosol, mitochondrion	27.02	33.72
KRH54504	Soybean	cytosol	24.53	31.85
Solyc03g113210.2.1	Tomato	cytosol	23.29	31.78
PGSC0003DMT400065213	Potato	cytosol	23.29	31.38
AT5G37610.1	Thale cress	endoplasmic reticulum, extracellular	13.04	25.77
TraesCS7D01G167200.1	Wheat	mitochondrion	21.12	25.0
CDY01000	Canola	endoplasmic reticulum, plasma membrane	20.5	18.28
CDY39954	Canola	extracellular	10.56	16.04

Protein Annotations

EnsemblPlants:TraesCS3D01G247900.1	EnsemblPlantsGene:TraesCS3D01G247900	Gene3D:2.40.160.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	InterPro:IPR023614	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	PANTHER:PTHR11743	PANTHER:PTHR11743:SF30
PFAM:PF01459	SEG:seg	TIGR:cd07306	MapMan:24.4.1	:	:

Description

No Description!

Coordinates

chr3D:+:346838396..346841787

Molecular Weight (calculated)

34024.2 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.231

Length

322 amino acids

Sequence
(BLAST)

001: MADPVDATSK PAPVDGPSKP APVDAPSKPA PVDGPSMAAQ CGAPPKPATG PGLYSEIGKK ARDLLYKDFT TDQKLTLTTY AANGTVITGT STTKKEAILS
101: EIQTQFNYNN VKVDVKANSD SQVLITTTSE TRCIPGLKRI VTIPLTNHTP AKAELQYLHD YAGISVGFGL HSKPLINVSA LVGNKALALG ADVAYDSATG
201: DFTKCNFGAS FTNDDLYAAA MLNNKGDSLS ASYYQMVSNS QAAVGGEVSH SLSSNETTTT LGFQYSLDPL TTTKVRYDNH GMVSALIQHE LRPKSLLTIS
301: SEFDTKAIEK SSKIGLSLLL KP

Best Arabidopsis Sequence Match ( AT3G01280.1 )
(BLAST)

001: MVKGPGLYTE IGKKARDLLY KDHNSDQKFS ITTFSPAGVA ITSTGTKKGD LLLGDVAFQS RRKNITTDLK VCTDSTFLIT ATVDEAAPGL RSIFSFKVPD
101: QNSGKVELQY LHEYAGISTS MGLTQNPTVN FSGVIGSNVL AVGTDVSFDT KSGNFTKINA GLSFTKEDLI ASLTVNDKGD LLNASYYHIV NPLFNTAVGA
201: EVSHKLSSKD STITVGTQHS LDPLTSVKAR VNSAGIASAL IQHEWKPKSF FTISGEVDTK SIDKSAKVGL ALALKP

Arabidopsis Description

VDAC1Mitochondrial outer membrane protein porin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.