Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G253900.1 | Wheat | nucleus | 94.41 | 93.42 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 93.88 | 92.89 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 77.93 | 70.6 |
| EER95303 | Sorghum | nucleus, plastid | 59.31 | 58.53 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 49.2 | 54.25 |
| KRH52056 | Soybean | nucleus | 29.79 | 53.08 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 38.3 | 50.35 |
| CDY06752 | Canola | nucleus | 37.5 | 49.47 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 44.41 | 45.75 |
| PGSC0003DMT400030222 | Potato | nucleus | 42.55 | 45.2 |
| TraesCS5B01G078200.1 | Wheat | plastid | 45.21 | 45.09 |
| Solyc12g088520.1.1 | Tomato | nucleus | 42.02 | 44.51 |
| PGSC0003DMT400030176 | Potato | nucleus | 41.76 | 44.1 |
| Solyc12g088500.1.1 | Tomato | nucleus | 41.49 | 44.07 |
| AT5G43080.1 | Thale cress | nucleus | 41.49 | 43.94 |
| Solyc12g088530.1.1 | Tomato | nucleus | 41.22 | 43.79 |
| Solyc12g088470.1.1 | Tomato | nucleus | 41.76 | 43.61 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 41.76 | 43.61 |
| KRH61375 | Soybean | nucleus | 37.77 | 43.43 |
| CDY17091 | Canola | nucleus | 40.96 | 43.02 |
| KRH61371 | Soybean | nucleus | 39.89 | 42.98 |
| PGSC0003DMT400055428 | Potato | nucleus | 42.02 | 42.93 |
| Solyc04g078310.2.1 | Tomato | nucleus | 42.29 | 42.86 |
| KRH15427 | Soybean | nucleus, plastid | 41.49 | 42.86 |
| CDY22369 | Canola | nucleus | 39.89 | 42.73 |
| CDY66770 | Canola | nucleus | 40.96 | 42.54 |
| KRH61369 | Soybean | nucleus | 36.97 | 42.51 |
| KRH05614 | Soybean | nucleus | 41.22 | 42.23 |
| Zm00001d048127_P001 | Maize | plastid | 53.72 | 42.17 |
| Bra033658.1-P | Field mustard | nucleus | 39.89 | 42.13 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 41.49 | 42.05 |
| CDY17037 | Canola | nucleus, plastid | 40.69 | 42.03 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 40.69 | 42.03 |
| CDY06757 | Canola | nucleus, plastid | 40.43 | 41.87 |
| Bra040793.1-P | Field mustard | nucleus | 40.43 | 41.87 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 40.43 | 41.87 |
| CDY47596 | Canola | nucleus | 40.43 | 41.87 |
| KRH52055 | Soybean | nucleus | 39.63 | 41.62 |
| CDY17039 | Canola | nucleus | 40.16 | 41.6 |
| Bra040710.1-P | Field mustard | nucleus | 40.96 | 41.51 |
| CDY47595 | Canola | nucleus, plastid | 40.69 | 41.24 |
| Bra032220.1-P | Field mustard | nucleus | 39.1 | 41.18 |
| AT1G47220.1 | Thale cress | nucleus | 35.64 | 40.98 |
| CDY23653 | Canola | nucleus | 38.83 | 40.9 |
| AT1G47210.2 | Thale cress | nucleus | 40.16 | 40.59 |
| KRH61373 | Soybean | nucleus, plastid | 40.43 | 40.53 |
| Os03t0208700-00 | Rice | nucleus | 43.35 | 39.85 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 35.64 | 39.3 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 38.56 | 39.19 |
| PGSC0003DMT400056625 | Potato | nucleus | 38.3 | 37.89 |
| Solyc10g049360.1.1 | Tomato | nucleus | 38.03 | 37.83 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 32.45 | 34.37 |
| TraesCS5B01G114300.2 | Wheat | plastid | 35.64 | 26.43 |
| TraesCS3B01G183400.1 | Wheat | plastid | 34.57 | 25.49 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 26.86 | 24.11 |
| Os03t0208800-00 | Rice | nucleus | 25.0 | 23.68 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 27.13 | 23.39 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 27.13 | 23.39 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 25.27 | 23.23 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 27.13 | 22.13 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G254000.1 | EnsemblPlantsGene:TraesCS4B01G254000 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr4B:-:519405792..519407985
Molecular Weight (calculated)
41821.6 Da
IEP (calculated)
8.707
GRAVY (calculated)
-0.166
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRGCRRKQ QGAAEDKENT AGTAPPPPKR PRCTERRALA ELPAASTANN ASAAPSKPMT RAAAREAAAA AVEEEARRRE CSAIAARPAA SRQTDAGAAQ
101: ASVGPYVADI DGYLRSLEVE QLRRPRDDYM VAMQKDVNAT MRGILVDWLV DVVDEFKLLV DTLYIAVSYI DRFLTASVIT RDRLQLLGVA SLFVAAKYEE
201: IHVPKLDKFS DITDGTYTNQ QVVKMEADIL KYLNFQMGSP TVRTFLLRFL ISCRGGNCAS AKRLELMCCY LAELSLLDYD CIRFLPSVIA AACMFLARFT
301: ISPKIRPWNL TLQEKTGYKV SDLRSCILRI HDLQLGRQYS NLKAIRSKYS ERKFGCVSMM ASPVEIPASL LEDLDK
101: ASVGPYVADI DGYLRSLEVE QLRRPRDDYM VAMQKDVNAT MRGILVDWLV DVVDEFKLLV DTLYIAVSYI DRFLTASVIT RDRLQLLGVA SLFVAAKYEE
201: IHVPKLDKFS DITDGTYTNQ QVVKMEADIL KYLNFQMGSP TVRTFLLRFL ISCRGGNCAS AKRLELMCCY LAELSLLDYD CIRFLPSVIA AACMFLARFT
301: ISPKIRPWNL TLQEKTGYKV SDLRSCILRI HDLQLGRQYS NLKAIRSKYS ERKFGCVSMM ASPVEIPASL LEDLDK
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.