Factsheet for TraesCS2B01G313700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G132200.1
TraesCS2A01G297500.1
TraesCS2B01G154700.1
TraesCS2B01G313700.1
TraesCS2D01G295500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	TraesCS2A01G132200.1	AT2G41680.1	25448674
AT3G11630.1	TraesCS2B01G154700.1	AT2G41680.1	25448674
AT5G06290.1	TraesCS2A01G132200.1	AT2G41680.1	25448674
AT5G06290.1	TraesCS2B01G154700.1	AT2G41680.1	25448674
AT5G06290.1	TraesCS2A01G297500.1	AT3G11630.1	21798944
AT5G06290.1	TraesCS2B01G313700.1	AT3G11630.1	21798944
AT5G06290.1	TraesCS2D01G295500.2	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G073760.2	Barley	plastid	96.95	96.95
TraesCS2D01G295500.2	Wheat	plastid	93.51	94.96
TraesCS2A01G297500.1	Wheat	plastid	93.51	94.96
CDY67317	Canola	endoplasmic reticulum	54.58	91.08
Os02t0537700-01	Rice	extracellular	77.1	77.39
Zm00001d050666_P001	Maize	plastid	76.72	77.31
CDY67795	Canola	cytosol	72.52	77.24
EES06920	Sorghum	plastid	76.34	76.92
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	75.95	76.54
Solyc10g082030.1.1	Tomato	plastid	75.95	74.53
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	75.57	74.16
AT3G11630.1	Thale cress	plastid	74.05	72.93
Bra009181.1-P	Field mustard	plastid	74.43	72.49
CDY01041	Canola	plastid	71.76	72.31
CDY08508	Canola	plastid	71.76	72.03
Bra034824.1-P	Field mustard	plastid	71.76	72.03
AT5G06290.1	Thale cress	plastid	74.43	71.43
PGSC0003DMT400042222	Potato	plastid	74.05	71.32
Solyc01g007740.2.1	Tomato	plastid	71.76	70.41
CDX73860	Canola	plastid	71.76	70.15
VIT_08s0007g02490.t01	Wine grape	plastid	70.99	68.13
Bra038667.1-P	Field mustard	plastid	58.4	68.0
CDY56598	Canola	cytosol	71.37	67.51
KRH67987	Soybean	endoplasmic reticulum	48.47	65.46
CDX73858	Canola	plastid	73.28	64.21
Bra001415.1-P	Field mustard	plastid	69.85	59.61
TraesCS2B01G174400.1	Wheat	cytosol	21.76	26.15

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0019725
GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417
PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS2B01G313700	EnsemblPlants:TraesCS2B01G313700.1	TIGR:cd03015
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:448904796..448907800

Molecular Weight (calculated)

28287.7 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.006

Length

262 amino acids

Sequence
(BLAST)

001: MACAFSASTV STAAALVASP KPAGAPQCLS FPRAIAGAAA RPSRLAAASS RTARARSFVA RASAEYDLPL VGNKAPDFAA EAVFDQEFIN VKLSDYIGKK
101: YVILFFYPLD FTFVCPTEIT AFSDRHEEFE KINTEILGVS VDSVFSHLAW VQTERKSGGL GDLKYPLVSD VTKSISKSFG VLIPDQGIAL RGLFIIDKEG
201: VIQHSTINNL GIGRSVDETL RTLQALQYVQ ENPDEVCPAG WKPGEKSMKP DPKGSKEYFA AI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.