CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73858
CDX73860
CDX79923
CDY01041
CDY08508
CDY22534
CDY23835
CDY35405
CDY56598

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06290.1	CDX79923	AT2G41680.1	25448674
AT5G06290.1	CDY22534	AT2G41680.1	25448674
AT5G06290.1	CDY23835	AT2G41680.1	25448674
AT5G06290.1	CDY35405	AT2G41680.1	25448674
AT5G06290.1	CDX73858	AT3G11630.1	21798944
AT5G06290.1	CDX73860	AT3G11630.1	21798944
AT5G06290.1	CDY01041	AT3G11630.1	21798944
AT5G06290.1	CDY08508	AT3G11630.1	21798944
AT5G06290.1	CDY56598	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67317	Canola	endoplasmic reticulum	61.38	96.18
GSMUA_Achr3P02970_001	Banana	cytosol	15.85	90.7
Bra009181.1-P	Field mustard	plastid	89.43	81.78
CDY08508	Canola	plastid	82.11	77.39
CDY01041	Canola	plastid	81.71	77.31
AT5G06290.1	Thale cress	plastid	85.37	76.92
CDX73860	Canola	plastid	83.33	76.49
TraesCS2D01G295500.2	Wheat	plastid	77.64	74.03
TraesCS2A01G297500.1	Wheat	plastid	77.64	74.03
CDY56598	Canola	cytosol	82.93	73.65
Zm00001d050666_P001	Maize	plastid	76.83	72.69
TraesCS2B01G313700.1	Wheat	golgi, plastid	77.24	72.52
EES06920	Sorghum	plastid	76.42	72.31
HORVU2Hr1G073760.2	Barley	plastid	76.83	72.14
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	78.05	71.91
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	75.61	71.54
Os02t0537700-01	Rice	extracellular	75.61	71.26
Solyc10g082030.1.1	Tomato	plastid	76.83	70.79
VIT_08s0007g02490.t01	Wine grape	plastid	77.24	69.6
Solyc01g007740.2.1	Tomato	plastid	74.8	68.91
CDX73858	Canola	plastid	82.93	68.23
KRH67987	Soybean	endoplasmic reticulum	53.66	68.04
PGSC0003DMT400042222	Potato	plastid	75.2	68.01
CDY13290	Canola	cytosol	10.16	32.47
CDY72143	Canola	cytosol	10.98	21.26
CDY72482	Canola	cytosol	8.54	20.0

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	GO:A0A078JMY8	UniProt:A0A078JMY8	InterPro:AhpC/TSA
EnsemblPlants:CDY67795	ProteinID:CDY67795	ProteinID:CDY67795.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00066856001
InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681
PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0004EDEB4F	:	:	:	:	:

Description

BnaAnng25180DBnaAnng25180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMY8]

Coordinates

chrLK036516:+:5973..8078

Molecular Weight (calculated)

27354.5 Da

IEP (calculated)

4.754

GRAVY (calculated)

-0.176

Length

246 amino acids

Sequence
(BLAST)

001: MGLDQWALKN RNDPDTVHSS LQYGVVPSIG SLTCIPSSSR RSFAVKAQAD DLPLVGNKAP DFEAEAVFDQ EFIKVKLSEY IGKKYVILFF YPLDFTFVCP
101: TEITAFSDRY EEFEKLNTEV LGVSVDSVFS HLAWVQTERK SGGLGDLNYP LVSDITKSIS KSFGVLIPDQ GIALRGLFII DKEGVIQHST INNLGIGRSV
201: DETMRTLQAL QYVQENPDEV CPAGWKPGEK SMKPDPKLSK EYFSAI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.