CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY23835
CDY35405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	CDX79923	AT2G41680.1	25448674
AT3G11630.1	CDY22534	AT2G41680.1	25448674
AT3G11630.1	CDY23835	AT2G41680.1	25448674
AT3G11630.1	CDY35405	AT2G41680.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73860	Canola	plastid	84.28	94.03
CDY67317	Canola	endoplasmic reticulum	48.49	92.36
GSMUA_Achr3P02970_001	Banana	cytosol	12.71	88.37
CDY01041	Canola	plastid	73.58	84.62
CDY67795	Canola	cytosol	68.23	82.93
AT3G11630.1	Thale cress	plastid	72.91	81.95
CDY08508	Canola	plastid	71.24	81.61
CDY56598	Canola	cytosol	73.91	79.78
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	67.22	75.28
EES06920	Sorghum	plastid	65.22	75.0
Os02t0537700-01	Rice	extracellular	65.22	74.71
Zm00001d050666_P001	Maize	plastid	64.88	74.62
TraesCS2D01G295500.2	Wheat	plastid	64.21	74.42
TraesCS2A01G297500.1	Wheat	plastid	64.21	74.42
Solyc01g007740.2.1	Tomato	plastid	66.22	74.16
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	64.21	73.85
Solyc10g082030.1.1	Tomato	plastid	65.89	73.78
TraesCS2B01G313700.1	Wheat	golgi, plastid	64.21	73.28
HORVU2Hr1G073760.2	Barley	plastid	64.21	73.28
VIT_08s0007g02490.t01	Wine grape	plastid	65.55	71.79
Bra001415.1-P	Field mustard	plastid	73.24	71.34
PGSC0003DMT400042222	Potato	plastid	64.88	71.32
KRH67987	Soybean	endoplasmic reticulum	42.81	65.98
CDY13290	Canola	cytosol	8.36	32.47
CDY72143	Canola	cytosol	9.03	21.26
CDY72482	Canola	cytosol	7.02	20.0

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	GO:A0A078CFR4	InterPro:AhpC/TSA	EnsemblPlants:CDX73858
ProteinID:CDX73858	ProteinID:CDX73858.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00111565001	InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417	PFscan:PS51352
PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0004EECD44	SEG:seg	:	:	:	:

Description

BnaA03g31890D

Coordinates

chrLK031800:-:249818..251698

Molecular Weight (calculated)

32819.4 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.005

Length

299 amino acids

Sequence
(BLAST)

001: MASVASSTTL ISSSASVLPA TKSSLLPSPS LSFLPTLSSP SPSASLRLAR PSPLTSIRSS SRRSFAVKAQ TGCWVCVDLT KSPELYQNLV HRVVRFVQIS
101: LKDDLPLVGN KAPDFEAEAV FDQEFIKVKL SEYIGKKCVI LFFYPLDFTF VCPTEITAFS DRYAEFEKLN TEVLGVSVDS VFSHLAWVQT DRKSGGLGDL
201: NYPLISDVTK SISKSFGVLI HDQGIALRGL FIIDKEGVIQ HSTINNLGIG RSVDETMRTL QALQYIQENP DEVCPAGWKP GEKSMKPDPK LSKEYFSAI

Best Arabidopsis Sequence Match ( AT3G11630.1 )
(BLAST)

001: MASVASSTTL ISSPSSRVFP AKSSLSSPSV SFLRTLSSPS ASASLRSGFA RRSSLSSTSR RSFAVKAQAD DLPLVGNKAP DFEAEAVFDQ EFIKVKLSDY
101: IGKKYVILFF YPLDFTFVCP TEITAFSDRH SEFEKLNTEV LGVSVDSVFS HLAWVQTDRK SGGLGDLNYP LISDVTKSIS KSFGVLIHDQ GIALRGLFII
201: DKEGVIQHST INNLGIGRSV DETMRTLQAL QYIQENPDEV CPAGWKPGEK SMKPDPKLSK EYFSAI

Arabidopsis Description

BAS12-Cys peroxiredoxin BAS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.