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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 16481623
plastid: 16595579
plastid: 18419817
extracellular: 19786127
plastid: 22160430
golgi: 23128297
plastid: 23683508
unclear: 25769308
plastid: 27562633
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 19786127 doi
FJ Kong, A Oyanagi, S Komatsu
National Institute of Crop Science, Tsukuba 305-8518, Japan.
msms PMID: 18419817 doi
FM Dupont
Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.
msms PMID: 27562633 doi
W Xu, H Lv, M Zhao, Y Li, Y Qi, Z Peng, G Xia, M Wang
Bio-Tech Research Center, Shandong Academy of Agricultural Science, Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crop, Jinan, 250100, China., The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, 27 Shandanan Road, Jinan, Shandong 250100, China.
msms PMID: 16595579 doi
Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
msms PMID: 16481623 doi
Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan
Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
msms PMID: 23683508 doi
ZH He, HW Li, Y Shen, ZS Li, H Mi
National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China.
gfp, msms PMID: 23128297 doi
M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G132200.1
TraesCS2A01G297500.1
TraesCS2B01G154700.1
TraesCS2B01G313700.1
TraesCS2D01G295500.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11630.1 TraesCS2A01G132200.1 AT2G41680.1 25448674
AT3G11630.1 TraesCS2B01G154700.1 AT2G41680.1 25448674
AT5G06290.1 TraesCS2A01G132200.1 AT2G41680.1 25448674
AT5G06290.1 TraesCS2B01G154700.1 AT2G41680.1 25448674
AT5G06290.1 TraesCS2A01G297500.1 AT3G11630.1 21798944
AT5G06290.1 TraesCS2B01G313700.1 AT3G11630.1 21798944
AT5G06290.1 TraesCS2D01G295500.2 AT3G11630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G295500.2 Wheat plastid 99.61 99.61
TraesCS2B01G313700.1 Wheat golgi, plastid 94.96 93.51
HORVU2Hr1G073760.2 Barley plastid 94.96 93.51
CDY67317 Canola endoplasmic reticulum 55.43 91.08
CDY67795 Canola cytosol 74.03 77.64
Zm00001d050666_P001 Maize plastid 77.52 76.92
Os02t0537700-01 Rice extracellular 77.52 76.63
EES06920 Sorghum plastid 77.13 76.54
Zm00001d016736_P001 Maize extracellular, mitochondrion, plastid 76.74 76.15
Solyc10g082030.1.1 Tomato plastid 76.74 74.16
PGSC0003DMT400072569 Potato cytosol, extracellular, plastid 76.36 73.78
Bra009181.1-P Field mustard plastid 75.58 72.49
CDY01041 Canola plastid 72.87 72.31
AT3G11630.1 Thale cress plastid 74.42 72.18
CDY08508 Canola plastid 72.87 72.03
Bra034824.1-P Field mustard plastid 72.87 72.03
AT5G06290.1 Thale cress plastid 75.58 71.43
CDX73860 Canola plastid 72.87 70.15
Solyc01g007740.2.1 Tomato plastid 72.48 70.04
PGSC0003DMT400042222 Potato plastid 73.26 69.49
VIT_08s0007g02490.t01 Wine grape plastid 71.71 67.77
Bra038667.1-P Field mustard plastid 58.91 67.56
CDY56598 Canola cytosol 71.32 66.43
KRH67987 Soybean endoplasmic reticulum 49.61 65.98
CDX73858 Canola plastid 74.42 64.21
Bra001415.1-P Field mustard plastid 71.32 59.93
Protein Annotations
KEGG:00480+1.11.1.15MapMan:10.5.3.1Gene3D:3.40.30.10InterPro:AhpC/TSAGO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016209GO:GO:0016491GO:GO:0019725
GO:GO:0045454GO:GO:0051920GO:GO:0055114InterPro:IPR013766PFAM:PF00578PFAM:PF10417
PIRSF:PIRSF000239PFscan:PS51352PANTHER:PTHR10681PANTHER:PTHR10681:SF140InterPro:Peroxiredoxin_AhpC-typInterPro:Peroxiredoxin_C
SUPFAM:SSF52833InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainEnsemblPlantsGene:TraesCS2A01G297500EnsemblPlants:TraesCS2A01G297500.1TIGR:cd03015
SEG:seg:::::
Description
No Description!
Coordinates
chr2A:+:511474228..511476969
Molecular Weight (calculated)
27929.3 Da
IEP (calculated)
6.774
GRAVY (calculated)
-0.024
Length
258 amino acids
Sequence
(BLAST)
001: MACAFSASTV STAAALVASP KPAGAPQCLS FPRAAARPSR LAAAGSRTAR ARSFVARAAA EYDLPLVGNK APDFAAEAVF DQEFINVKLS DYIGKKYVIL
101: FFYPLDFTFV CPTEITAFSD RHEEFEKINT EILGVSVDSV FSHLAWVQTE RKSGGLGDLK YPLVSDVTKS ISKSFGVLIP DQGIALRGLF IIDKEGVIQH
201: STINNLGIGR SVDETLRTLQ ALQYVQENPD EVCPAGWKPG EKSMKPDPKG SKEYFAAI
Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)
001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI
Arabidopsis Description
2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.