CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY23835
CDY35405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	CDX79923	AT2G41680.1	25448674
AT3G11630.1	CDY22534	AT2G41680.1	25448674
AT3G11630.1	CDY23835	AT2G41680.1	25448674
AT3G11630.1	CDY35405	AT2G41680.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67317	Canola	endoplasmic reticulum	51.99	91.72
GSMUA_Achr3P02970_001	Banana	cytosol	13.72	88.37
CDX73860	Canola	plastid	82.31	85.07
CDY67795	Canola	cytosol	73.65	82.93
CDY08508	Canola	plastid	76.17	80.84
CDY01041	Canola	plastid	75.81	80.77
AT3G11630.1	Thale cress	plastid	76.17	79.32
EES06920	Sorghum	plastid	70.04	74.62
Zm00001d050666_P001	Maize	plastid	69.68	74.23
Os02t0537700-01	Rice	extracellular	69.68	73.95
CDX73858	Canola	plastid	79.78	73.91
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	68.95	73.46
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	69.68	72.28
Solyc10g082030.1.1	Tomato	plastid	68.95	71.54
TraesCS2B01G313700.1	Wheat	golgi, plastid	67.51	71.37
TraesCS2A01G297500.1	Wheat	plastid	66.43	71.32
TraesCS2D01G295500.2	Wheat	plastid	66.43	71.32
HORVU2Hr1G073760.2	Barley	plastid	67.15	70.99
Solyc01g007740.2.1	Tomato	plastid	67.51	70.04
PGSC0003DMT400042222	Potato	plastid	67.87	69.12
VIT_08s0007g02490.t01	Wine grape	plastid	67.51	68.5
KRH67987	Soybean	endoplasmic reticulum	46.21	65.98
CDY13290	Canola	cytosol	9.03	32.47
CDY72143	Canola	cytosol	9.75	21.26
CDY72482	Canola	cytosol	7.58	20.0

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	GO:A0A078J0Q2	UniProt:A0A078J0Q2	InterPro:AhpC/TSA
EnsemblPlants:CDY56598	ProteinID:CDY56598	ProteinID:CDY56598.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00019779001
InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681
PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0004EDF7AC	SEG:seg	:	:	:	:

Description

BnaC03g73430DBnaC03g73430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0Q2]

Coordinates

chrLK033503:-:29845..32177

Molecular Weight (calculated)

30961.9 Da

IEP (calculated)

5.444

GRAVY (calculated)

-0.253

Length

277 amino acids

Sequence
(BLAST)

001: MHLEEAEEEY RVWIIEPPIG GREQRRDGVT NNATKSPLLP SPSLSFLPTL SSPSLRLARP SPLTSIRSTS RRSFAVKAQT DDLPLVGNKA PDFEAEAVFD
101: QEFIKVKLSE YIGKKYVILF FYPLDFTFVC PTEITAFSDR YAEFEKLNTQ VLGVSVDSVF SHLAWVQTDR KSGGLGDLNY PLISDVTKSI SKSFGVLIHD
201: QGIALRGLFI IDKEGVIQHS TINNLGIGRS VDETMRTLQA LQYIQENPDE VCPAGWKPGE KSMKPDPKLS KEYFSAI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.