Factsheet for Solyc10g082030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc04g016010.2.1
Solyc10g080080.1.1
Solyc10g082030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	Solyc04g016010.2.1	AT2G41680.1	25448674
AT3G11630.1	Solyc10g080080.1.1	AT2G41680.1	25448674
AT5G06290.1	Solyc04g016010.2.1	AT2G41680.1	25448674
AT5G06290.1	Solyc10g080080.1.1	AT2G41680.1	25448674
AT5G06290.1	Solyc01g007740.2.1	AT3G11630.1	21798944
AT5G06290.1	Solyc10g082030.1.1	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	97.38	97.38
CDY67317	Canola	endoplasmic reticulum	52.43	89.17
CDY67795	Canola	cytosol	70.79	76.83
TraesCS2D01G295500.2	Wheat	plastid	74.16	76.74
TraesCS2A01G297500.1	Wheat	plastid	74.16	76.74
TraesCS2B01G313700.1	Wheat	golgi, plastid	74.53	75.95
HORVU2Hr1G073760.2	Barley	plastid	74.53	75.95
KRH32817	Soybean	nucleus, plastid	72.66	75.19
Solyc01g007740.2.1	Tomato	plastid	74.53	74.53
KRH72215	Soybean	nucleus	72.28	74.23
EES06920	Sorghum	plastid	72.28	74.23
AT5G06290.1	Thale cress	plastid	75.28	73.63
Bra009181.1-P	Field mustard	plastid	74.16	73.61
Zm00001d050666_P001	Maize	plastid	71.54	73.46
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	71.16	73.08
CDY01041	Canola	plastid	71.16	73.08
CDX73860	Canola	plastid	72.66	72.39
AT3G11630.1	Thale cress	plastid	71.91	72.18
Bra034824.1-P	Field mustard	plastid	69.66	71.26
CDY08508	Canola	plastid	69.29	70.88
Os02t0537700-01	Rice	extracellular	69.29	70.88
Bra038667.1-P	Field mustard	plastid	59.55	70.67
CDY56598	Canola	cytosol	71.54	68.95
VIT_08s0007g02490.t01	Wine grape	plastid	70.41	68.86
CDX73858	Canola	plastid	73.78	65.89
Bra001415.1-P	Field mustard	plastid	70.41	61.24
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.19	60.91
KRH04627	Soybean	extracellular	21.35	45.97
GSMUA_Achr3P02980_001	Banana	cytosol	40.45	44.08
Solyc03g096040.2.1	Tomato	extracellular	23.22	28.31

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	UniProt:K4D389	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352
PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc10g082030.1
EnsemblPlants:Solyc10g082030.1.1	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002769C11	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:62934427..62938400

Molecular Weight (calculated)

29463.0 Da

IEP (calculated)

6.283

GRAVY (calculated)

-0.132

Length

267 amino acids

Sequence
(BLAST)

001: MACSASSSTA LLSYTSRASI SPKSHISQSI SVPSAFNGLR NCNPLVSRVA RSINTRVAQA ERRRFAVCAS SELPLVGNQA PDFEAEAVFD QEFIKVKLSE
101: YIGKKYVILF FYPLDFTFVC PTEITAFSDR YEEFEKVNTE ILGVSVDSVF SHLAWVQTER KSGGLGDLNY PLISDVTKSI SKAYNVLIPD QGIALRGLFI
201: IDKEGVIQHS TINNLGIGRS VDETLRTLQA LQYVQENPDE VCPAGWKPGE KSMKPDPKGS KEYFASI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.