Factsheet for Solyc03g096040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071283	Potato	cytosol	94.98	95.41
VIT_05s0020g00600.t01	Wine grape	cytosol	80.82	80.82
KRH42408	Soybean	endoplasmic reticulum	79.0	79.36
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	61.19	76.14
Os07t0638300-01	Rice	plastid	76.26	75.91
TraesCS2D01G154300.2	Wheat	cytosol, plastid	73.97	74.31
TraesCS2B01G174400.1	Wheat	cytosol	73.06	73.39
CDY72143	Canola	cytosol	42.01	72.44
AT1G48130.1	Thale cress	cytosol	71.23	72.22
EER97619	Sorghum	cytosol	72.6	71.62
CDY13290	Canola	cytosol	25.11	71.43
Bra038102.1-P	Field mustard	cytosol	69.86	70.83
CDY72482	Canola	cytosol	33.33	69.52
Zm00001d022278_P001	Maize	cytosol	71.23	68.12
GSMUA_Achr2P03480_001	Banana	cytosol	33.33	67.59
Os07t0638400-01	Rice	cytosol	67.58	67.27
Bra032241.1-P	Field mustard	cytosol	69.86	66.23
GSMUA_Achr11P...	Banana	cytosol	69.86	61.2
HORVU2Hr1G026810.1	Barley	cytosol	60.27	60.55
VIT_05s0077g00050.t01	Wine grape	cytosol	48.86	56.02
VIT_05s0020g00590.t01	Wine grape	cytosol	40.64	52.66
Solyc10g082030.1.1	Tomato	plastid	28.31	23.22
Solyc01g007740.2.1	Tomato	plastid	27.85	22.85

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.1	Gene3D:3.30.1020.10	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016209	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	UniProt:K4BJ26	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239
PFscan:PS51352	PANTHER:PTHR43503	PANTHER:PTHR43503:SF4	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc03g096040.2	EnsemblPlants:Solyc03g096040.2.1	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002767BED	:

Description

No Description!

Coordinates

chr3:+:57857627..57859305

Molecular Weight (calculated)

24239.0 Da

IEP (calculated)

5.947

GRAVY (calculated)

-0.358

Length

219 amino acids

Sequence
(BLAST)

001: MPGLTIGDDL PNLQVETNHG KMKLHDYVGD SYTILFSHPG DFTPVCTTEL AMMAAYANKF AERGVKLLGL SCDDVQSHNE WIKDIEAYNK GHKVTYPIIA
101: DPNRELIKQL NMVDPDEIDS SGYNLPSRAL HIVGPDKKIK LSFLYPASTG RNMDEVLRVV ESLQKAAKYK VATPANWKPG EPVVIAPAVS NEEAKEMFPQ
201: GFDTANLPSG KGYLRFTNV

Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)

001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS

Arabidopsis Description

PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.