CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 21246215
endoplasmic reticulum: 23041469
mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21246215 doi

HB Krishnan, SS Natarajan, JO Bennett, RC Sicher

Plant Genetics Research Unit, Agricultural Research Service, USDA, 205 Curtis Hall, Columbia, MO 65211, USA. hari.krishnan@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	77.52	96.02
VIT_05s0020g00600.t01	Wine grape	cytosol	79.82	79.45
Solyc03g096040.2.1	Tomato	extracellular	79.36	79.0
PGSC0003DMT400071283	Potato	cytosol	78.9	78.9
CDY13290	Canola	cytosol	25.69	72.73
AT1G48130.1	Thale cress	cytosol	70.64	71.3
Os07t0638300-01	Rice	plastid	70.64	70.0
TraesCS2D01G154300.2	Wheat	cytosol, plastid	69.72	69.72
Bra038102.1-P	Field mustard	cytosol	68.81	69.44
TraesCS2B01G174400.1	Wheat	cytosol	69.27	69.27
CDY72143	Canola	cytosol	39.91	68.5
EER97619	Sorghum	cytosol	69.72	68.47
Bra032241.1-P	Field mustard	cytosol	68.81	64.94
Os07t0638400-01	Rice	cytosol	65.14	64.55
CDY72482	Canola	cytosol	30.73	63.81
Zm00001d022278_P001	Maize	cytosol	66.97	63.76
GSMUA_Achr2P03480_001	Banana	cytosol	29.82	60.19
GSMUA_Achr11P...	Banana	cytosol	68.81	60.0
HORVU2Hr1G026810.1	Barley	cytosol	58.72	58.72
VIT_05s0077g00050.t01	Wine grape	cytosol	45.87	52.36
VIT_05s0020g00590.t01	Wine grape	cytosol	38.07	49.11
KRH32817	Soybean	nucleus, plastid	27.52	23.26
KRH72215	Soybean	nucleus	27.52	23.08
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.02	21.82
KRH67987	Soybean	endoplasmic reticulum	18.35	20.62
KRH04627	Soybean	extracellular	11.47	20.16

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.1	EntrezGene:100820616	Gene3D:3.30.1020.10	Gene3D:3.40.30.10	EMBL:ACUP02004803
InterPro:AhpC/TSA	EnsemblPlantsGene:GLYMA_08G088000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0019725
GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	UniProt:I1KRJ7	InterPro:IPR013766
EnsemblPlants:KRH42408	ProteinID:KRH42408	ProteinID:KRH42408.1	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239
PFscan:PS51352	PANTHER:PTHR43503	PANTHER:PTHR43503:SF4	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233884D	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:6669380..6670657

Molecular Weight (calculated)

24387.4 Da

IEP (calculated)

6.935

GRAVY (calculated)

-0.391

Length

218 amino acids

Sequence
(BLAST)

001: MPGLTIGDTI PDLQVETNQG KIKLHQFCAD GWTILFSHPG DFTPVCTTEL GKMAQYAKEF YQRGVKLLGL SCDDVQSHNE WIKDIEAYTP GAKVNYPIIA
101: DPKREIIKQL NMVDPDEKDS TGNLPSRALH IVGPDLKIKL SFLYPATTGR NMDEVLRVIE SLQKASKFKV ATPANWKPGD PVVITPDVTN EQAKEMFPQG
201: FESVKLPSKK EYLRLTKV

Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)

001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS

Arabidopsis Description

PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.