Factsheet for TraesCS2D01G154300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G174400.1	Wheat	cytosol	94.04	94.04
Os07t0638300-01	Rice	plastid	84.86	84.09
EER97619	Sorghum	cytosol	83.94	82.43
Zm00001d022278_P001	Maize	cytosol	83.94	79.91
HORVU2Hr1G026810.1	Barley	cytosol	78.9	78.9
Solyc03g096040.2.1	Tomato	extracellular	74.31	73.97
Os07t0638400-01	Rice	cytosol	74.31	73.64
PGSC0003DMT400071283	Potato	cytosol	73.39	73.39
CDY72143	Canola	cytosol	42.2	72.44
VIT_05s0020g00600.t01	Wine grape	cytosol	72.48	72.15
AT1G48130.1	Thale cress	cytosol	71.1	71.76
CDY72482	Canola	cytosol	34.4	71.43
Bra038102.1-P	Field mustard	cytosol	69.27	69.91
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	56.42	69.89
KRH42408	Soybean	endoplasmic reticulum	69.72	69.72
CDY13290	Canola	cytosol	24.31	68.83
Bra032241.1-P	Field mustard	cytosol	69.27	65.37
GSMUA_Achr11P...	Banana	cytosol	70.18	61.2
VIT_05s0077g00050.t01	Wine grape	cytosol	45.41	51.83
VIT_05s0020g00590.t01	Wine grape	cytosol	34.86	44.97
TraesCS2D01G295500.2	Wheat	plastid	27.52	23.26

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.1	Gene3D:3.30.1020.10	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	InterPro:IPR013766	PFAM:PF00578
PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR43503	PANTHER:PTHR43503:SF4	InterPro:Peroxiredoxin_AhpC-typ
InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS2D01G154300	EnsemblPlants:TraesCS2D01G154300.2
TIGR:cd03016	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:97600607..97603265

Molecular Weight (calculated)

23978.7 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.360

Length

218 amino acids

Sequence
(BLAST)

001: MPGLTIGDTV PNLELDSTHG KIRIHDYVGN GYVILFSHPG DFTPVCTTEL AAMANYAKEF EKRGVKLLGI SCDDVQSHKE WTKDIEAYKP GSRVTYPIMA
101: DPDRSAIKQL NMVDPDEKDG QGQLPSRTLH IVGPDKVVKL SFLYPSCTGR NMDEVVRAVD SLLTAAKHKV ATPANWKPGE CVVIAPGVSD EEAKKMFPQG
201: FETADLPSKK GYLRFTKV

Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)

001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS

Arabidopsis Description

PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.