Factsheet for PGSC0003DMT400071283

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096040.2.1	Tomato	extracellular	95.41	94.98
VIT_05s0020g00600.t01	Wine grape	cytosol	80.73	80.37
KRH42408	Soybean	endoplasmic reticulum	78.9	78.9
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	61.47	76.14
Os07t0638300-01	Rice	plastid	75.69	75.0
TraesCS2D01G154300.2	Wheat	cytosol, plastid	73.39	73.39
TraesCS2B01G174400.1	Wheat	cytosol	72.48	72.48
EER97619	Sorghum	cytosol	73.39	72.07
AT1G48130.1	Thale cress	cytosol	69.72	70.37
CDY13290	Canola	cytosol	24.77	70.13
CDY72143	Canola	cytosol	40.83	70.08
Bra038102.1-P	Field mustard	cytosol	68.35	68.98
GSMUA_Achr2P03480_001	Banana	cytosol	33.95	68.52
CDY72482	Canola	cytosol	32.57	67.62
Zm00001d022278_P001	Maize	cytosol	70.64	67.25
Os07t0638400-01	Rice	cytosol	67.43	66.82
Bra032241.1-P	Field mustard	cytosol	68.35	64.5
GSMUA_Achr11P...	Banana	cytosol	70.64	61.6
HORVU2Hr1G026810.1	Barley	cytosol	60.09	60.09
VIT_05s0077g00050.t01	Wine grape	cytosol	49.54	56.54
VIT_05s0020g00590.t01	Wine grape	cytosol	40.37	52.07
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	27.98	22.85
PGSC0003DMT400042222	Potato	plastid	27.52	22.06

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.1	Gene3D:3.30.1020.10	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016209	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	UniProt:M1CNG8	PFAM:PF00578	PFAM:PF10417	EnsemblPlantsGene:PGSC0003DMG400027720
PGSC:PGSC0003DMG400027720	EnsemblPlants:PGSC0003DMT400071283	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR43503	PANTHER:PTHR43503:SF4
InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000294E249

Description

1-Cys peroxiredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400027720]

Coordinates

chr3:-:35275721..35278084

Molecular Weight (calculated)

24082.8 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.389

Length

218 amino acids

Sequence
(BLAST)

001: MPGLTIGDDL PNLQVETNHG KMKLHDYVGD SYTILFSHPG DFTPVCTTEL AMMAAYASKF GERGVKLVGL SCDDVQSHNE WIKDIEAYNG QKVTYPIIAD
101: PKRELIKQLN MVDPDETDSS GHKLPSRALH IVGPDKKIKL SFLYPASTGR NMDEVLRVVE SLQKAAKYKV ATPANWKPGE PVVIAPSVSN EEAKEMFPQG
201: FDTANLPSGK SYLRFTNV

Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)

001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS

Arabidopsis Description

PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.