CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022278_P001	Maize	cytosol	92.79	89.96
TraesCS2D01G154300.2	Wheat	cytosol, plastid	82.43	83.94
TraesCS2B01G174400.1	Wheat	cytosol	81.53	83.03
Os07t0638300-01	Rice	plastid	79.28	80.0
Os07t0638400-01	Rice	cytosol	72.97	73.64
PGSC0003DMT400071283	Potato	cytosol	72.07	73.39
Solyc03g096040.2.1	Tomato	extracellular	71.62	72.6
VIT_05s0020g00600.t01	Wine grape	cytosol	70.72	71.69
HORVU2Hr1G026810.1	Barley	cytosol	68.92	70.18
KRH42408	Soybean	endoplasmic reticulum	68.47	69.72
CDY72143	Canola	cytosol	39.19	68.5
CDY72482	Canola	cytosol	31.98	67.62
AT1G48130.1	Thale cress	cytosol	65.77	67.59
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	53.15	67.05
Bra038102.1-P	Field mustard	cytosol	63.96	65.74
CDY13290	Canola	cytosol	22.52	64.94
GSMUA_Achr11P...	Banana	cytosol	69.82	62.0
Bra032241.1-P	Field mustard	cytosol	63.96	61.47
VIT_05s0077g00050.t01	Wine grape	cytosol	43.69	50.79
VIT_05s0020g00590.t01	Wine grape	cytosol	35.59	46.75
EES06920	Sorghum	plastid	24.32	20.77

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.1	Gene3D:3.30.1020.10	Gene3D:3.40.30.10	EntrezGene:8073081	InterPro:AhpC/TSA
UniProt:C5X3B9	EnsemblPlants:EER97619	ProteinID:EER97619	ProteinID:EER97619.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869
InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR43503
PANTHER:PTHR43503:SF4	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	EnsemblPlantsGene:SORBI_3002G391100	SUPFAM:SSF52833	unigene:Sbi.3724
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001A83A20	RefSeq:XP_002461098.1	:	:

Description

hypothetical protein

Coordinates

chr2:+:74394811..74396002

Molecular Weight (calculated)

24185.8 Da

IEP (calculated)

6.633

GRAVY (calculated)

-0.373

Length

222 amino acids

Sequence
(BLAST)

001: MPGLTIGDTV PNLELDSTHG KIRIHDYVGD GYAIIFSHPA DFTPVCTTEM AAMAGYAKEF EKRGVKLLGI SCDDVESHRE WTKDIEAYGG GKQKVTYPIL
101: ADPGRDAIRQ LNMVDPDEKD SNGVSLPSRA LHVVGPDKAV KLSFLYPATT GRNMDEVLRA VDSLLTAAKH GGKVATPANW KPGDRAVIAP SVSDEEARKM
201: FPHGFETADL PSKKSYLRFT KV

Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)

001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS

Arabidopsis Description

PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.