Factsheet for VIT_05s0020g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g00050.t01	Wine grape	cytosol	71.6	63.35
CDY72143	Canola	cytosol	34.91	46.46
CDY72482	Canola	cytosol	27.22	43.81
VIT_05s0020g00600.t01	Wine grape	cytosol	56.21	43.38
GSMUA_Achr2P03480_001	Banana	cytosol	26.63	41.67
Solyc03g096040.2.1	Tomato	extracellular	52.66	40.64
PGSC0003DMT400071283	Potato	cytosol	52.07	40.37
Os07t0638300-01	Rice	plastid	49.7	38.18
KRH42408	Soybean	endoplasmic reticulum	49.11	38.07
Bra038102.1-P	Field mustard	cytosol	47.93	37.5
AT1G48130.1	Thale cress	cytosol	46.15	36.11
Os07t0638400-01	Rice	cytosol	46.75	35.91
EER97619	Sorghum	cytosol	46.75	35.59
Bra032241.1-P	Field mustard	cytosol	48.52	35.5
TraesCS2D01G154300.2	Wheat	cytosol, plastid	44.97	34.86
TraesCS2B01G174400.1	Wheat	cytosol	44.38	34.4
Zm00001d022278_P001	Maize	cytosol	46.15	34.06
GSMUA_Achr11P...	Banana	cytosol	48.52	32.8
HORVU2Hr1G026810.1	Barley	cytosol	41.42	32.11
CDY13290	Canola	cytosol	13.61	29.87
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.77	29.55
VIT_08s0007g02490.t01	Wine grape	plastid	23.67	14.65

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.1	Gene3D:3.30.1020.10	Gene3D:3.40.30.10	ProteinID:CCB50284	ProteinID:CCB50284.1
UniProt:F6HE32	EMBL:FN595749	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	PFAM:PF10417	PANTHER:PTHR43503
PANTHER:PTHR43503:SF4	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002108461	ArrayExpress:VIT_05s0020g00590
EnsemblPlantsGene:VIT_05s0020g00590	EnsemblPlants:VIT_05s0020g00590.t01	:	:	:	:

Description

No Description!

Coordinates

chr5:-:2482793..2483986

Molecular Weight (calculated)

18608.4 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.223

Length

169 amino acids

Sequence
(BLAST)

001: MPSLGLGDTI PNLEVETTHG KFKLHDFFGD SWPGSKVSYL IVSDPKSDII LLLNMVDPDA IDSYGNNLPS RVLYIIGPDK KIKLGFLYPG STGRNVDEVM
101: RVLDALQKAA KHRITTPVNW KPGELVVIQP GVTKPNSCSL RVSRLLLFHP TSHTFASPNS DHPTTSTHH

Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)

001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS

Arabidopsis Description

PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.