CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 25806999
endoplasmic reticulum: 27224218

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42408	Soybean	endoplasmic reticulum	96.02	77.52
CDY13290	Canola	cytosol	31.82	72.73
PGSC0003DMT400071283	Potato	cytosol	76.14	61.47
VIT_05s0020g00600.t01	Wine grape	cytosol	76.14	61.19
Solyc03g096040.2.1	Tomato	extracellular	76.14	61.19
AT1G48130.1	Thale cress	cytosol	71.59	58.33
TraesCS2D01G154300.2	Wheat	cytosol, plastid	69.89	56.42
Bra038102.1-P	Field mustard	cytosol	68.75	56.02
TraesCS2B01G174400.1	Wheat	cytosol	69.32	55.96
Os07t0638300-01	Rice	plastid	67.61	54.09
EER97619	Sorghum	cytosol	67.05	53.15
Bra032241.1-P	Field mustard	cytosol	68.18	51.95
Os07t0638400-01	Rice	cytosol	63.07	50.45
Zm00001d022278_P001	Maize	cytosol	64.77	49.78
GSMUA_Achr11P...	Banana	cytosol	67.61	47.6
CDY72143	Canola	cytosol	32.39	44.88
CDY72482	Canola	cytosol	26.14	43.81
HORVU2Hr1G026810.1	Barley	cytosol	53.98	43.58
GSMUA_Achr2P03480_001	Banana	cytosol	26.14	42.59
VIT_05s0077g00050.t01	Wine grape	cytosol	40.91	37.7
VIT_05s0020g00590.t01	Wine grape	cytosol	29.55	30.77
KRH32817	Soybean	nucleus, plastid	28.41	19.38
KRH72215	Soybean	nucleus	28.41	19.23
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.59	17.27
KRH67987	Soybean	endoplasmic reticulum	17.05	15.46
KRH04627	Soybean	extracellular	9.66	13.71

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.1	Gene3D:3.30.1020.10	Gene3D:3.40.30.10	UniProt:A0A0R0K508	EMBL:ACUP02003267
InterPro:AhpC/TSA	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G133500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766
EnsemblPlants:KRH58527	ProteinID:KRH58527	ProteinID:KRH58527.1	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239
PFscan:PS51352	PANTHER:PTHR43503	PANTHER:PTHR43503:SF4	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0006ED6919	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:32648978..32650000

Molecular Weight (calculated)

19710.7 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.365

Length

176 amino acids

Sequence
(BLAST)

001: MPGITIGDTI PDLQVETNQG KINLHQFCAD GWTILFSHPG DFTPVCTTEL GKMAQYAKEF YQRGVKLLGL SCDDVQSHNE WIKDIEAYTP GAKVNYPIIA
101: DPKREIIKNM DEVLRVIESL QKASKFKVAT PANWKPGDPV VISPGVTNEQ AKEMFPKGFE TVDLPSKKEY LRLTKV

Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)

001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS

Arabidopsis Description

PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.