CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32817	Soybean	nucleus, plastid	93.08	93.8
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	74.62	72.66
Solyc10g082030.1.1	Tomato	plastid	74.23	72.28
Solyc01g007740.2.1	Tomato	plastid	73.85	71.91
PGSC0003DMT400042222	Potato	plastid	74.23	70.96
VIT_08s0007g02490.t01	Wine grape	plastid	74.23	70.7
KRH67987	Soybean	endoplasmic reticulum	52.69	70.62
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.0	65.0
KRH04627	Soybean	extracellular	22.69	47.58
GSMUA_Achr3P02980_001	Banana	cytosol	42.69	45.31
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	19.23	28.41
KRH42408	Soybean	endoplasmic reticulum	23.08	27.52

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	EntrezGene:100817464	Gene3D:3.40.30.10	UniProt:A0A0R4J2P7	EMBL:ACUP02001189
InterPro:AhpC/TSA	EnsemblPlantsGene:GLYMA_02G198400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0019725
GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlants:KRH72215
ProteinID:KRH72215	ProteinID:KRH72215.1	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352
PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0001CAE6EF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:37991738..37995375

Molecular Weight (calculated)

28512.9 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.122

Length

260 amino acids

Sequence
(BLAST)

001: MACSATSASL FSANPTPLFS PKPSLSLHLN PLPTRPSPSL TRPSLSLTRP SHSRRSFVVK ASSSELPLVG NTAPDFEAEA VFDQEFINVK LSDYIGKKYV
101: VLFFYPLDFT FVCPTEITAF SDRHAEFEAL NTEILGVSVD SVFSHLAWIQ TDRKSGGLGD LNYPLISDVT KSISKSYGVL IPDQGIALRG LFIIDKEGVI
201: QHSTINNLAI GRSVDETKRT LQALQYVQEN PDEVCPAGWK PGEKSMKPDP KLSKDYFAAV

Best Arabidopsis Sequence Match ( AT3G11630.1 )
(BLAST)

001: MASVASSTTL ISSPSSRVFP AKSSLSSPSV SFLRTLSSPS ASASLRSGFA RRSSLSSTSR RSFAVKAQAD DLPLVGNKAP DFEAEAVFDQ EFIKVKLSDY
101: IGKKYVILFF YPLDFTFVCP TEITAFSDRH SEFEKLNTEV LGVSVDSVFS HLAWVQTDRK SGGLGDLNYP LISDVTKSIS KSFGVLIHDQ GIALRGLFII
201: DKEGVIQHST INNLGIGRSV DETMRTLQAL QYIQENPDEV CPAGWKPGEK SMKPDPKLSK EYFSAI

Arabidopsis Description

BAS12-Cys peroxiredoxin BAS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.