CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72215	Soybean	nucleus	65.0	55.0
KRH32817	Soybean	nucleus, plastid	63.64	54.26
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	60.91	50.19
Solyc10g082030.1.1	Tomato	plastid	60.91	50.19
VIT_08s0007g02490.t01	Wine grape	plastid	61.36	49.45
Solyc01g007740.2.1	Tomato	plastid	59.55	49.06
KRH67987	Soybean	endoplasmic reticulum	42.73	48.45
PGSC0003DMT400042222	Potato	plastid	58.64	47.43
GSMUA_Achr3P02980_001	Banana	cytosol	47.27	42.45
KRH04627	Soybean	extracellular	23.18	41.13
KRH42408	Soybean	endoplasmic reticulum	21.82	22.02
KRH58527	Soybean	cytosol, endoplasmic reticulum, mitochondrion	17.27	21.59

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	EMBL:ACUP02012147	InterPro:AhpC/TSA	EnsemblPlantsGene:GLYMA_19G198200
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	UniProt:K7MZB4	EnsemblPlants:KRG96244	ProteinID:KRG96244	ProteinID:KRG96244.1
PFAM:PF00578	PFscan:PS51352	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140	SUPFAM:SSF52833	SignalP:SignalP-noTM
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002962FC3	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:45542681..45545102

Molecular Weight (calculated)

24707.1 Da

IEP (calculated)

4.782

GRAVY (calculated)

0.250

Length

220 amino acids

Sequence
(BLAST)

001: MGILDSSSLK VVSIVLEFLR VCWSLLFSEL PLVGNTAPDF EAEAVFDQEF IKVKLSEYIG KKYVVLFSYP LDFTFVCPTE ITAFSDCYAE FEELNTEILG
101: VSVDSEFSHL AWVQTDRNSG GLGDLKYPLI SEITKSISKS YGVLIPDQGI ALRGLFIIDK GLFCILPLTT WQLVEVLMRQ REHSRLCSMC RRTPMKFAQL
201: GGSLAMKPDP KLSKDYFAAV

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.