Factsheet for PGSC0003DMT400072569

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042222
PGSC0003DMT400060907
PGSC0003DMT400070103
PGSC0003DMT400070106
PGSC0003DMT400072569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	PGSC0003DMT400060907	AT2G41680.1	25448674
AT3G11630.1	PGSC0003DMT400070103	AT2G41680.1	25448674
AT3G11630.1	PGSC0003DMT400070106	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400060907	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400070103	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400070106	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400042222	AT3G11630.1	21798944
AT5G06290.1	PGSC0003DMT400072569	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g082030.1.1	Tomato	plastid	97.38	97.38
CDY67317	Canola	endoplasmic reticulum	53.18	90.45
CDY67795	Canola	cytosol	71.91	78.05
TraesCS2D01G295500.2	Wheat	plastid	73.78	76.36
TraesCS2A01G297500.1	Wheat	plastid	73.78	76.36
KRH32817	Soybean	nucleus, plastid	73.03	75.58
TraesCS2B01G313700.1	Wheat	golgi, plastid	74.16	75.57
HORVU2Hr1G073760.2	Barley	plastid	74.16	75.57
PGSC0003DMT400042222	Potato	plastid	76.78	75.37
Bra009181.1-P	Field mustard	plastid	75.66	75.09
KRH72215	Soybean	nucleus	72.66	74.62
AT5G06290.1	Thale cress	plastid	76.03	74.36
EES06920	Sorghum	plastid	71.91	73.85
CDY01041	Canola	plastid	71.91	73.85
CDX73860	Canola	plastid	73.78	73.51
Zm00001d050666_P001	Maize	plastid	71.16	73.08
AT3G11630.1	Thale cress	plastid	72.66	72.93
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	70.79	72.69
Bra034824.1-P	Field mustard	plastid	70.41	72.03
Bra038667.1-P	Field mustard	plastid	60.67	72.0
CDY08508	Canola	plastid	70.04	71.65
Os02t0537700-01	Rice	extracellular	69.29	70.88
CDY56598	Canola	cytosol	72.28	69.68
VIT_08s0007g02490.t01	Wine grape	plastid	70.41	68.86
CDX73858	Canola	plastid	75.28	67.22
Bra001415.1-P	Field mustard	plastid	71.54	62.22
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.19	60.91
KRH04627	Soybean	extracellular	21.72	46.77
GSMUA_Achr3P02980_001	Banana	cytosol	40.45	44.08
PGSC0003DMT400071283	Potato	cytosol	22.85	27.98

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	EntrezGene:102583123	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016209	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	UniProt:M1CQK3	PFAM:PF00578	PFAM:PF10417	EnsemblPlantsGene:PGSC0003DMG400028238
PGSC:PGSC0003DMG400028238	EnsemblPlants:PGSC0003DMT400072569	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140
InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000296B624
RefSeq:XP_006339159.1	SEG:seg	:	:	:	:

Description

Thioredoxin peroxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400028238]

Coordinates

chr10:+:56037253..56041820

Molecular Weight (calculated)

29425.9 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.146

Length

267 amino acids

Sequence
(BLAST)

001: MACSASSSTA LLSSTSRASI SPKSHISQSI SVPSAFNGLR NCKPFVSRVA RSISTRVAQS ERRRFAVCAS SELPLVGNQA PDFEAEAVFD QEFIKVKLSE
101: YIGKKYVILF FYPLDFTFVC PTEITAFSDR YEEFEKVNTE VLGVSVDSVF SHLAWVQTER KSGGLGDLNY PLISDVTKSI SKSYNVLIPD QGIALRGLFI
201: IDKEGVIQHS TINNLGIGRS VDETLRTLQA LQYVQENPDE VCPAGWKPGE KSMKPDPKGS KEYFASI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.