Factsheet for PGSC0003DMT400060907

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029584
PGSC0003DMT400039329
PGSC0003DMT400057872
PGSC0003DMT400060907
PGSC0003DMT400061915
PGSC0003DMT400066172
PGSC0003DMT400070103
PGSC0003DMT400070106

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	PGSC0003DMT400029584	AT1G02870.1	21798944
AT2G41680.1	PGSC0003DMT400066172	AT1G49850.1	21798944
AT2G41680.1	PGSC0003DMT400061915	AT1G76760.1	21798944
AT2G41680.1	PGSC0003DMT400060907	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400070103	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400070106	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400057872	AT3G04860.1	21798944
AT2G41680.1	PGSC0003DMT400039329	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080080.1.1	Tomato	plastid	93.74	93.74
PGSC0003DMT400070106	Potato	cytosol	37.38	87.88
GSMUA_Achr8P09560_001	Banana	cytosol	34.99	82.25
GSMUA_Achr8P09570_001	Banana	cytosol	25.6	79.43
HORVU2Hr1G023170.1	Barley	cytosol	69.8	78.63
KRH33290	Soybean	nucleus	73.85	77.26
KRH72015	Soybean	nucleus	73.3	76.25
Bra000234.1-P	Field mustard	plastid	71.45	75.93
Bra004639.1-P	Field mustard	plastid	72.74	75.82
CDY35405	Canola	plastid	71.27	75.73
VIT_08s0007g08760.t01	Wine grape	plastid	73.66	75.61
CDY22534	Canola	plastid	71.09	75.54
AT2G41680.1	Thale cress	plastid	72.74	74.67
Os07t0657900-02	Rice	plastid	70.53	74.37
CDX79923	Canola	mitochondrion, plastid	72.74	73.97
KXG36845	Sorghum	plastid	71.27	73.86
TraesCS2B01G154700.1	Wheat	plastid	70.17	73.27
CDY23835	Canola	plastid	72.56	72.56
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	73.3	70.32
Zm00001d022381_P016	Maize	plastid	71.09	69.8
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.98	63.65
PGSC0003DMT400070103	Potato	plastid	21.73	54.88
PGSC0003DMT400048037	Potato	cytosol	30.2	50.0
PGSC0003DMT400035477	Potato	mitochondrion	30.57	45.23

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	EntrezGene:102585390	Gene3D:3.40.30.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf
InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
InterPro:IPR036188	UniProt:M1C6N0	PFAM:PF00085	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG400023691	PGSC:PGSC0003DMG400023691
EnsemblPlants:PGSC0003DMT400060907	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PFscan:PS51352	PANTHER:PTHR42863
PANTHER:PTHR42863:SF1	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	SUPFAM:SSF52833	TIGRFAMs:TIGR01292
InterPro:Thioredox_Rdtase	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002963FF4	RefSeq:XP_006351311.1	SEG:seg

Description

Thioredoxin reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400023691]

Coordinates

chr10:+:57780058..57786649

Molecular Weight (calculated)

59044.4 Da

IEP (calculated)

6.835

GRAVY (calculated)

-0.252

Length

543 amino acids

Sequence
(BLAST)

001: MANTTPNITN SVGIGIRIRT KTRPASTSMA ATPATLSTGH CIPTGLLVIN SGSSRRGGAA RVDSVNGHLT RSRASSFSIR AAAEVEPVGT SSSAQGIENL
101: VIIGSGPAGY TAAIYAARAN LKPVVFEGFQ AGGVPGGQLM TTTEVENFPG FPEGITGPDL MDRMRRQAER WGAELYQEDV EFIDVKNAPF TVHSSERKVK
201: CHSLIVATGA NARRLGLPRE DEFWSRGISA CAICDGASPL FKGQVLAVVG GGDTATEEAI YLTKYARHVH LLVRKDQLRA SRAMQDRVFN NPNITVHFNT
301: ETVDVVSNPK GQMSGILIRK ADTQEESVLE AKGLFYGIGH SPNSQLLEGQ VQLDSSGYIL VKEGTANTSV EGVFAAGDVQ DHEWRQAITA AGSGCVAALS
401: VERYLTNKNL LLEFHQPPTE EIKKELSEKD VQEGFDITLT KHKGQYALRK LYHESPRLMC VLYTSPTCGP CRTLKPILSK VIDEFDKDVH LVEIDITEDP
501: EIAEAAEIMG TPCVQFFKNK EMLRTVSGVK MKREYREFIE ANK

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.