Factsheet for VIT_08s0007g08760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01650.t01
VIT_03s0091g00480.t01
VIT_07s0005g00270.t01
VIT_08s0007g08760.t01
VIT_14s0030g01760.t01
VIT_14s0066g00670.t01
VIT_18s0072g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	VIT_07s0005g00270.t01	AT1G02870.1	21798944
AT2G41680.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT2G41680.1	VIT_18s0072g00400.t01	AT1G76760.1	21798944
AT2G41680.1	VIT_08s0007g08760.t01	AT2G41680.1	21798944
AT2G41680.1	VIT_14s0030g01760.t01	AT3G04860.1	21798944
AT2G41680.1	VIT_02s0025g01650.t01	AT4G10930.1	21798944
AT2G41680.1	VIT_14s0066g00670.t01	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09560_001	Banana	cytosol	37.24	85.28
KRH33290	Soybean	nucleus	80.15	81.7
PGSC0003DMT400070106	Potato	cytosol	35.54	81.39
GSMUA_Achr8P09570_001	Banana	cytosol	26.84	81.14
HORVU2Hr1G023170.1	Barley	cytosol	72.97	80.08
KRH72015	Soybean	nucleus	79.02	80.08
Bra004639.1-P	Field mustard	plastid	75.24	76.39
Bra000234.1-P	Field mustard	plastid	73.35	75.93
CDY35405	Canola	plastid	73.16	75.73
CDY22534	Canola	plastid	73.16	75.73
Os07t0657900-02	Rice	plastid	73.72	75.73
AT2G41680.1	Thale cress	plastid	75.61	75.61
TraesCS2B01G154700.1	Wheat	plastid	74.1	75.38
CDX79923	Canola	mitochondrion, plastid	75.43	74.72
PGSC0003DMT400060907	Potato	plastid	75.61	73.66
Solyc10g080080.1.1	Tomato	plastid	75.61	73.66
CDY23835	Canola	plastid	75.43	73.48
KXG36845	Sorghum	plastid	71.83	72.52
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	75.24	70.32
Zm00001d022381_P016	Maize	plastid	71.83	68.72
Solyc04g016010.2.1	Tomato	nucleus	68.43	67.41
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.78	64.49
PGSC0003DMT400070103	Potato	plastid	19.47	47.91
VIT_04s0044g01750.t01	Wine grape	mitochondrion	31.57	44.53
VIT_05s0049g00110.t01	Wine grape	cytosol	8.51	42.45

Protein Annotations

KEGG:00450+1.8.1.9	MapMan:10.5.2	EntrezGene:100262307	wikigene:100262307	Gene3D:3.40.30.10	Gene3D:3.50.50.60
ProteinID:CCB55112	ProteinID:CCB55112.1	UniProt:F6HKV5	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EMBL:FN595991
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	InterPro:IPR036188
EntrezGene:LOC100262307	wikigene:LOC100262307	PFAM:PF00085	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469
ScanProsite:PS00573	PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2
SUPFAM:SSF51905	SUPFAM:SSF52833	TIGRFAMs:TIGR01292	InterPro:Thioredox_Rdtase	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0001983E44	ArrayExpress:VIT_08s0007g08760	EnsemblPlantsGene:VIT_08s0007g08760	EnsemblPlants:VIT_08s0007g08760.t01	unigene:Vvi.22515	RefSeq:XP_002278551
RefSeq:XP_002278551.1	RefSeq:XP_010653765.1	RefSeq:XP_010653766.1	SEG:seg	:	:

Description

Thioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:F6HKV5]

Coordinates

chr8:+:22138535..22148666

Molecular Weight (calculated)

57920.1 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.260

Length

529 amino acids

Sequence
(BLAST)

001: MAAKIGLGLG SVTQRAAMAA VTPSPSPSPL SNALPPPHSV IFLKSWSARR RSLRLDSSRK SPFSLRVKAS TSSDSEASSA KGVENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQVGGV PGGQLMTTTE VENFPGFPDG ITGPDLMDRM RRQAERWGAE LFQEDVEFLD VKTTPFTVQS SERKVKCYSV IFATGATAKR
201: LKLPREDEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RNELRASKAM QDRVHNNPNI TLHFNTEAVD IVSNNRGQMS
301: GILLRKVDTG EESVLEAKGL FYGIGHTPNS QLLKGQVELD SSGYVIVEEG SARTSVEGVF AAGDVQDHEW RQAVTAAGSG CVAALSVERY LVGNNLLIEF
401: HQPQTEEVKK ELTDRDVREG FDITLTKHRG QYSLRKLYHE SPRLICVLYT APTCGPCRTL KPILSKVIDE FDQNVHFVEI DIEEDPEIAE AAGIMGTPCV
501: QFFKNKEMIK TLSGVKMKNE YREFIESNK

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.