Factsheet for PGSC0003DMT400070106

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029584
PGSC0003DMT400039329
PGSC0003DMT400057872
PGSC0003DMT400060907
PGSC0003DMT400061915
PGSC0003DMT400066172
PGSC0003DMT400070103
PGSC0003DMT400070106

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	PGSC0003DMT400029584	AT1G02870.1	21798944
AT2G41680.1	PGSC0003DMT400066172	AT1G49850.1	21798944
AT2G41680.1	PGSC0003DMT400061915	AT1G76760.1	21798944
AT2G41680.1	PGSC0003DMT400060907	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400070103	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400070106	AT2G41680.1	21798944
AT2G41680.1	PGSC0003DMT400057872	AT3G04860.1	21798944
AT2G41680.1	PGSC0003DMT400039329	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09560_001	Banana	cytosol	81.82	81.82
Solyc04g016010.2.1	Tomato	nucleus	96.54	41.53
HORVU2Hr1G023170.1	Barley	cytosol	80.09	38.38
PGSC0003DMT400060907	Potato	plastid	87.88	37.38
KRH33290	Soybean	nucleus	82.68	36.8
Bra000234.1-P	Field mustard	plastid	80.95	36.59
CDY35405	Canola	plastid	80.95	36.59
CDY22534	Canola	plastid	80.52	36.4
KRH72015	Soybean	nucleus	82.25	36.4
Bra004639.1-P	Field mustard	plastid	81.82	36.28
AT2G41680.1	Thale cress	plastid	82.25	35.92
TraesCS2B01G154700.1	Wheat	plastid	80.09	35.58
VIT_08s0007g08760.t01	Wine grape	plastid	81.39	35.54
CDX79923	Canola	mitochondrion, plastid	81.82	35.39
Os07t0657900-02	Rice	plastid	78.79	35.34
KXG36845	Sorghum	plastid	79.22	34.92
CDY23835	Canola	plastid	81.82	34.81
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	83.98	34.28
Zm00001d022381_P016	Maize	plastid	79.22	33.09
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.09	30.99
PGSC0003DMT400048037	Potato	cytosol	22.94	16.16
PGSC0003DMT400035477	Potato	mitochondrion	23.38	14.71
GSMUA_Achr8P09570_001	Banana	cytosol	2.16	2.86
PGSC0003DMT400070103	Potato	plastid	0.43	0.47

Protein Annotations

MapMan:10.5.2	Gene3D:3.40.30.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	InterPro:IPR036188
UniProt:M1CLP4	PFAM:PF00085	PFAM:PF07992	EnsemblPlantsGene:PGSC0003DMG402027256	PGSC:PGSC0003DMG402027256	EnsemblPlants:PGSC0003DMT400070106
PRINTS:PR00469	PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000296D082	:	:

Description

Thioredoxin reductase [Source:PGSC_GENE;Acc:PGSC0003DMG402027256]

Coordinates

chr4:+:10428713..10433543

Molecular Weight (calculated)

25683.6 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.296

Length

231 amino acids

Sequence
(BLAST)

001: MSGILIRTAD TGEESVLEAK GLFYGIGHSP NSKLLEGQVE LDSAGYILVK ESTAKTSVEG VFAAGDVQDH EWRQAVTAAG SGCLAALSVE RYLTSKNLLV
101: EFHQPQAEDN KKELTEKDVQ EGFDITYAKH KGQYALWKLY HESPRLLCVL YTSPSCGPCR TLKPILGKVI DEFDQHVHFV EIDITEDPEI AEAAEIMGTP
201: CVQFFKNKEM LRTISGVKMK REYRELIGAN K

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.