Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g107290.2.1 | Tomato | nucleus | 75.35 | 78.62 |
| CDY32837 | Canola | nucleus | 33.68 | 43.3 |
| CDY61552 | Canola | nucleus | 35.42 | 42.68 |
| CDY16531 | Canola | nucleus | 32.99 | 42.41 |
| CDY20854 | Canola | nucleus | 35.42 | 42.15 |
| AT1G49850.1 | Thale cress | nucleus | 35.76 | 41.2 |
| Bra014221.1-P | Field mustard | nucleus | 31.6 | 41.18 |
| Bra039652.1-P | Field mustard | nucleus | 34.38 | 40.74 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 39.24 | 40.65 |
| KRG91075 | Soybean | nucleus | 32.29 | 39.41 |
| KRH35698 | Soybean | nucleus | 32.29 | 37.8 |
| Os03t0206900-01 | Rice | nucleus | 32.64 | 34.56 |
| HORVU4Hr1G069450.3 | Barley | nucleus | 30.9 | 34.5 |
| TraesCS4A01G049500.1 | Wheat | nucleus | 32.64 | 34.18 |
| EER95307 | Sorghum | nucleus | 32.29 | 33.94 |
| TraesCS4B01G255400.1 | Wheat | nucleus | 32.29 | 33.7 |
| TraesCS4D01G255100.1 | Wheat | nucleus | 32.29 | 33.7 |
| Zm00001d048134_P001 | Maize | nucleus | 31.6 | 33.46 |
| Zm00001d028055_P001 | Maize | nucleus | 31.25 | 33.09 |
| GSMUA_Achr6P24690_001 | Banana | nucleus | 28.12 | 30.11 |
| TraesCS5D01G085300.1 | Wheat | nucleus | 24.31 | 25.45 |
| KXG23810 | Sorghum | cytosol | 22.57 | 24.9 |
| Zm00001d030843_P001 | Maize | nucleus | 21.18 | 24.9 |
| TraesCS5A01G072600.1 | Wheat | nucleus | 21.53 | 24.51 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 22.92 | 24.26 |
| Os12t0580700-01 | Rice | nucleus | 21.18 | 23.64 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 22.22 | 23.36 |
| TraesCS4B01G077700.1 | Wheat | cytosol | 21.18 | 23.28 |
| TraesCS4A01G237400.1 | Wheat | mitochondrion, nucleus | 19.79 | 21.59 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 19.79 | 21.43 |
| TraesCS4D01G076100.1 | Wheat | golgi, mitochondrion | 17.71 | 19.39 |
| HORVU4Hr1G013180.1 | Barley | nucleus | 20.49 | 17.2 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400066172 | EnsemblPlantsGene:PGSC0003DMG400025755 | EntrezGene:102592559 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF293 | PFAM:PF13639 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400025755 | RefSeq:XP_006346328.1 | RefSeq:XP_015163740.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0002953F03 | UniProt:M1CF49 | MapMan:35.1 | : | : | : |
Description
RING-H2 finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025755]
Coordinates
chr1:+:83778167..83782991
Molecular Weight (calculated)
32445.7 Da
IEP (calculated)
7.732
GRAVY (calculated)
-0.748
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSASELFFT RRSRYGRSDL ELGSDLSTSR ISHNHSVHNR RHHHHNHQPT GNNNTRRDRL DVNDCEPLRR SPHRLRRLPL DRDSVSLDSG NGQVASGDTN
101: HATNNDNRIR DRVGISGSER LPGAVLLARE RLLQRLRGVS ISGNRRSYGV PTSSHRNNFT VEDDFRLADA SDWEADSSLW FAGTTPSSDL IWVRANERPP
201: GLSQEAMDLL HIGIYSNSDK EEARVVLDCS ICLDAFLEGD KLVCLPCGHR YHPCCLEPWV RTCGDCPYCR AAIHATSCRA KERCEASH
101: HATNNDNRIR DRVGISGSER LPGAVLLARE RLLQRLRGVS ISGNRRSYGV PTSSHRNNFT VEDDFRLADA SDWEADSSLW FAGTTPSSDL IWVRANERPP
201: GLSQEAMDLL HIGIYSNSDK EEARVVLDCS ICLDAFLEGD KLVCLPCGHR YHPCCLEPWV RTCGDCPYCR AAIHATSCRA KERCEASH
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
Arabidopsis Description
RHY1AProbable E3 ubiquitin-protein ligase RHY1A [Source:UniProtKB/Swiss-Prot;Acc:Q852U6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.