Factsheet for PGSC0003DMT400017291

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
peroxisome 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011414
PGSC0003DMT400013022
PGSC0003DMT400040750
PGSC0003DMT400042488
PGSC0003DMT400051168
PGSC0003DMT400075540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	PGSC0003DMT400013022	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400042488	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400051168	AT4G21990.1	21798944
AT1G05410.1	PGSC0003DMT400040750	AT5G49210.1	21798944
AT1G05410.1	PGSC0003DMT400011414	AT5G61230.1	21798944
AT1G05410.1	PGSC0003DMT400075540	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041923	Potato	cytosol	78.61	88.89
Solyc06g054180.1.1	Tomato	cytosol	89.6	62.75
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	89.6	61.51
PGSC0003DMT400092399	Potato	cytosol	70.52	51.91
PGSC0003DMT400077585	Potato	cytosol	42.77	38.14
PGSC0003DMT400059456	Potato	cytosol	75.14	36.72
PGSC0003DMT400077583	Potato	nucleus	73.99	31.53
PGSC0003DMT400082107	Potato	cytosol	61.85	22.96
CDY10107	Canola	cytosol	57.23	21.02
Bra015422.1-P	Field mustard	cytosol	56.65	20.9
CDY47288	Canola	cytosol	56.65	20.81
AT1G05410.1	Thale cress	cytosol	56.07	20.59
VIT_05s0020g03600.t01	Wine grape	cytosol	57.23	20.04
GSMUA_Achr7P27170_001	Banana	cytosol	55.49	19.28
KRH27646	Soybean	cytosol, nucleus	50.87	18.45
KRH77849	Soybean	nucleus	50.29	18.12
KRG99083	Soybean	nucleus	50.87	18.07
PGSC0003DMT400077587	Potato	nucleus	50.29	17.61
Os03t0747200-01	Rice	cytosol	44.51	17.04
HORVU5Hr1G094660.1	Barley	plastid	39.88	15.27
TraesCS5B01G390300.3	Wheat	cytosol	48.55	12.03
TraesCS5A01G385300.3	Wheat	cytosol	47.4	11.75
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	47.4	11.75
EER90880	Sorghum	cytosol	45.09	11.35
Zm00001d034000_P002	Maize	cytosol	44.51	11.13
PGSC0003DMT400090844	Potato	cytosol	3.47	5.0
PGSC0003DMT400082110	Potato	nucleus	8.67	3.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400017291	EnsemblPlantsGene:PGSC0003DMG400006740	InterPro:Oberon_PHD	ncoils:Coil	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2
PFAM:PF07227	PGSC:PGSC0003DMG400006740	UniParc:UPI000294FD9E	UniProt:M1A8S8	MapMan:35.2	:

Description

CDPK adapter protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006740]

Coordinates

chr00:+:39451943..39452464

Molecular Weight (calculated)

18753.8 Da

IEP (calculated)

6.610

GRAVY (calculated)

0.205

Length

173 amino acids

Sequence
(BLAST)

001: MQPLLSDSPF GAITCKAGNR ICSSLTAENP LTGTRFCDLC CSEPGFCGDC CCILCRKLIT LDYDGYSYIR CEATVVDGHI CGHVSHLECA LRAYMAGTVG
101: GSINLDAEYL CRYCDTRTDL VPHALKLLNI CTSVASYADI EKILNVGICI LRGSQKSSAK ELLHRIESIN AKV

Best Arabidopsis Sequence Match ( AT1G05410.2 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVGPRISGKG YFVDRYLYPP KYLPGLDTEI LRKNKVFRSR LSLQRYIRVH FPEADVQKFF ASFSWSIPCR DGQGVLPQKQ
101: VQLPVYSSDE DPMRDDGSDT AVCKAGNEKC RSLMPQCEAE TLPAMPCDIC CGERKFCVDC CCILCCKLIS LEHGGYSYIK CEAVVSEGHI CGHVAHMNCA
201: LRAYLAGTIG GSMGLDTEYY CRRCDAKKDL FPHVNKFLEI CQTVEYQGDV EKILNLGICI LRGAQRDNAK ELLNCIESTV IKLKCGTSLE DLWNDDTPTI
301: WSDYSDSGEA RENDTLQSLQ DVTPIGPIPF NHEAEMHKLE EEIGEVLRAL RKAQEFEYQI AEGKLHAQKE CLSDLYRQLE KEKSELSRRV SGTDANSLMT
401: NVLKRLDQIR KEVTKLKEME EVAKGFGRTP RGVLEEYFHL NIED

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.