CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01771
KRH11444
KRH36471
KRH39707
KRH46915
KRH51108
KRH76405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	KRH11444	AT4G21990.1	21798944
AT1G05410.1	KRH36471	AT4G21990.1	21798944
AT1G05410.1	KRH51108	AT4G21990.1	21798944
AT1G05410.1	KRH01771	AT5G49210.1	21798944
AT1G05410.1	KRH46915	AT5G49210.1	21798944
AT1G05410.1	KRH39707	AT5G61230.1	21798944
AT1G05410.1	KRH76405	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77849	Soybean	nucleus	92.4	93.75
KRH27646	Soybean	cytosol, nucleus	79.88	81.55
PGSC0003DMT400041923	Potato	cytosol	16.63	52.94
PGSC0003DMT400017291	Potato	cytosol, peroxisome, plastid	18.07	50.87
Solyc09g060020.1.1	Tomato	cytosol	7.8	50.67
Solyc09g061590.1.1	Tomato	cytosol	10.06	49.49
Solyc09g059870.1.1	Tomato	cytosol	12.53	46.92
Solyc09g060060.1.1	Tomato	cytosol	5.75	46.67
Solyc09g082140.2.1	Tomato	cytosol, nucleus	31.21	45.92
PGSC0003DMT400082107	Potato	cytosol	42.92	44.85
Solyc09g061600.1.1	Tomato	cytosol	7.19	44.3
CDY10107	Canola	cytosol	41.89	43.31
AT1G05410.1	Thale cress	cytosol	41.89	43.31
CDY47288	Canola	cytosol	41.68	43.1
Bra015422.1-P	Field mustard	cytosol	41.27	42.86
Solyc06g054230.2.1	Tomato	cytosol	28.54	42.38
Solyc09g061370.1.1	Tomato	cytosol	16.63	41.75
PGSC0003DMT400092399	Potato	cytosol	20.12	41.7
Solyc06g054200.1.1	Tomato	cytosol	18.89	41.63
Solyc09g059890.1.1	Tomato	cytosol	18.69	41.18
VIT_05s0020g03600.t01	Wine grape	cytosol	41.68	41.09
Solyc09g061500.1.1	Tomato	cytosol	10.47	40.8
Solyc09g061260.1.1	Tomato	cytosol	28.75	40.7
PGSC0003DMT400059456	Potato	cytosol	28.95	39.83
PGSC0003DMT400077585	Potato	cytosol	15.61	39.18
Solyc09g059740.1.1	Tomato	cytosol	22.38	39.07
Solyc09g061560.1.1	Tomato	mitochondrion	13.35	38.69
GSMUA_Achr7P27170_001	Banana	cytosol	39.22	38.35
Solyc06g054180.1.1	Tomato	cytosol	19.3	38.06
Solyc09g061490.1.1	Tomato	nucleus	10.27	37.88
Solyc09g059900.1.1	Tomato	cytosol	5.13	37.88
Solyc09g059910.1.1	Tomato	extracellular	20.12	37.12
Solyc06g054210.1.1	Tomato	nucleus	10.06	37.12
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	18.89	36.51
Solyc06g054190.1.1	Tomato	cytosol	9.86	36.36
PGSC0003DMT400077583	Potato	nucleus	29.98	35.96
Solyc06g054170.1.1	Tomato	cytosol	9.65	35.61
Os03t0747200-01	Rice	cytosol	31.83	34.29
Solyc09g060010.1.1	Tomato	extracellular	10.27	33.11
PGSC0003DMT400090844	Potato	cytosol	8.01	32.5
Solyc09g061360.1.1	Tomato	nucleus	6.16	28.85
TraesCS5D01G395300.2	Wheat	cytosol, nucleus, plastid	37.99	26.5
TraesCS5B01G390300.3	Wheat	cytosol	37.99	26.5
TraesCS5A01G385300.3	Wheat	cytosol	37.37	26.07
Zm00001d034000_P002	Maize	cytosol	36.96	26.01
Solyc10g018690.1.1	Tomato	cytosol	4.52	25.88
HORVU5Hr1G094660.1	Barley	plastid	23.41	25.22
EER90880	Sorghum	cytosol	35.32	25.04
Solyc09g059860.1.1	Tomato	cytosol	4.11	24.69
PGSC0003DMT400077587	Potato	nucleus	18.69	18.42
KRH76186	Soybean	nucleus	15.4	16.45
KRH76190	Soybean	nucleus	15.4	16.45
KRH65951	Soybean	plastid	10.47	14.78
KRG90260	Soybean	nucleus	13.96	14.47
KRH33505	Soybean	nucleus	13.96	11.83

Protein Annotations

EMBL:ACUP02010960	EnsemblPlants:KRG99083	EnsemblPlantsGene:GLYMA_18G119500	EntrezGene:100818560	InterPro:Oberon_PHD	PANTHER:PTHR33345
PANTHER:PTHR33345:SF2	PFAM:PF07227	ProteinID:KRG99083	ProteinID:KRG99083.1	SEG:seg	UniParc:UPI0002957164
UniProt:I1N151	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:14822118..14825052

Molecular Weight (calculated)

54840.5 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.438

Length

487 amino acids

Sequence
(BLAST)

001: MEMEMEMEME ENNGLLNLQA VAPEMSGEGF PYAPENWPEE GDIWGWRTGR RIVANRSRFQ DRYLYLPNRL IRALKEEKEK ENPGSGADSG PSSSSIRRQQ
101: HIFASKLAVE RYIKTHFPDA DIDAFFASFS WKIPALRSNG NAVPVAAVPL QQIAQEAYDS DSEGVVKCKA RNKKCTSLVL EEIEKYSPAM PCDICCSEPG
201: FCRDCCCILC CKTVSSAYGG YNYIKCQVNV GGGICGHVAH MECALRCLLA GKVGGSIGLD AQYHCRRCDG RTDMISHVNN LIQTCRAADL DAEIRKKILN
301: LGACLLRGSQ KPVAKELLCR IELAISKLKC GTNLEDIWKE DYSFVAHSAD NGNDVMEVMV YDDPFEVRTG LESYDFLPRS LKLESEVDQV LQALRKSQEL
401: EYKVAEETLQ DQKTYLKRLY QQLDREKYEL ACQNSSTSDV SSSAVRERKK QIRREVAKFE IMKKVANGFG RTSNDIVKEH FGLKVID

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.