Factsheet for Solyc09g061560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061580.1.1	Tomato	cytosol	58.93	85.34
Solyc09g061540.1.1	Tomato	cytosol	58.93	85.34
Solyc09g061370.1.1	Tomato	cytosol	76.79	66.49
Solyc09g061500.1.1	Tomato	cytosol	48.21	64.8
Solyc06g054200.1.1	Tomato	cytosol	78.57	59.73
Solyc09g061590.1.1	Tomato	cytosol	34.52	58.59
Solyc09g059900.1.1	Tomato	cytosol	20.83	53.03
Solyc09g061600.1.1	Tomato	cytosol	21.43	45.57
Solyc06g054180.1.1	Tomato	cytosol	60.12	40.89
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	59.52	39.68
Solyc09g060060.1.1	Tomato	cytosol	12.5	35.0
Solyc09g060020.1.1	Tomato	cytosol	14.29	32.0
Solyc06g054230.2.1	Tomato	cytosol	58.93	30.18
Solyc09g059890.1.1	Tomato	cytosol	31.55	23.98
Solyc09g059910.1.1	Tomato	extracellular	37.5	23.86
Solyc09g061260.1.1	Tomato	cytosol	48.81	23.84
Solyc09g059870.1.1	Tomato	cytosol	17.86	23.08
Solyc09g082140.2.1	Tomato	cytosol, nucleus	44.05	22.36
Solyc09g059740.1.1	Tomato	cytosol	33.93	20.43
AT1G05410.1	Thale cress	cytosol	44.05	15.71
Bra015422.1-P	Field mustard	cytosol	42.26	15.14
CDY47288	Canola	cytosol	42.26	15.07
CDY10107	Canola	cytosol	42.26	15.07
KRH77849	Soybean	nucleus	38.69	13.54
KRH27646	Soybean	cytosol, nucleus	38.1	13.42
KRG99083	Soybean	nucleus	38.69	13.35
Solyc09g060010.1.1	Tomato	extracellular	11.9	13.24
VIT_05s0020g03600.t01	Wine grape	cytosol	38.1	12.96
Solyc09g061360.1.1	Tomato	nucleus	2.98	4.81
Solyc10g018690.1.1	Tomato	cytosol	2.38	4.71
Solyc06g054210.1.1	Tomato	nucleus	2.98	3.79
Solyc06g054190.1.1	Tomato	cytosol	2.98	3.79
Solyc09g061490.1.1	Tomato	nucleus	2.98	3.79
Solyc06g054170.1.1	Tomato	cytosol	2.98	3.79
Solyc09g059860.1.1	Tomato	cytosol	1.79	3.7
Solyc09g082130.2.1	Tomato	nucleus	8.33	3.38

Protein Annotations

EnsemblPlants:Solyc09g061560.1.1	EnsemblPlantsGene:Solyc09g061560.1	InterPro:Oberon_PHD	PANTHER:PTHR33345	PANTHER:PTHR33345:SF2	PFAM:PF07227
SEG:seg	UniParc:UPI000276BB55	UniProt:K4CTY9	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr9:+:59752355..59752903

Molecular Weight (calculated)

18691.7 Da

IEP (calculated)

7.480

GRAVY (calculated)

0.118

Length

168 amino acids

Sequence
(BLAST)

001: MKERTTSAGT KMKPLLSDSS FRAITCKAGN QICRSLAAEN PFTETRFCDL CCSESGFCGD CCCILCSKLI SLDYDGYSYI HSEATLISCH ICGHVSYLEC
101: ALRYLCRYCD SRMDLVPHAS KLLNICTSIA CYADNEMILN VVIRILRGSQ KSIAKELLHH IESIYAKA

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.