Factsheet for Solyc09g061360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1
nucleus 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g032860.2.1
Solyc02g080640.2.1
Solyc03g031620.2.1
Solyc05g053730.2.1
Solyc08g005910.2.1
Solyc12g096260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05410.1	Solyc02g032860.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc02g080640.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc03g031620.2.1	AT4G21990.1	21798944
AT1G05410.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT1G05410.1	Solyc08g005910.2.1	AT5G61230.1	21798944
AT1G05410.1	Solyc12g096260.1.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061490.1.1	Tomato	nucleus	79.81	62.88
Solyc06g054210.1.1	Tomato	nucleus	74.04	58.33
Solyc06g054170.1.1	Tomato	cytosol	73.08	57.58
Solyc06g054190.1.1	Tomato	cytosol	72.12	56.82
Solyc09g059860.1.1	Tomato	cytosol	41.35	53.09
Solyc10g018690.1.1	Tomato	cytosol	39.42	48.24
PGSC0003DMT400077585	Potato	cytosol	42.31	22.68
Solyc09g059740.1.1	Tomato	cytosol	59.62	22.22
Solyc06g054230.2.1	Tomato	cytosol	63.46	20.12
Solyc09g059890.1.1	Tomato	cytosol	42.31	19.91
Solyc09g061260.1.1	Tomato	cytosol	57.69	17.44
Solyc09g059910.1.1	Tomato	extracellular	32.69	12.88
Solyc09g060010.1.1	Tomato	extracellular	14.42	9.93
VIT_05s0020g03600.t01	Wine grape	cytosol	39.42	8.3
AT1G05410.1	Thale cress	cytosol	35.58	7.86
CDY10107	Canola	cytosol	35.58	7.86
CDY47288	Canola	cytosol	35.58	7.86
Bra015422.1-P	Field mustard	cytosol	34.62	7.68
KRH77849	Soybean	nucleus	31.73	6.88
KRH27646	Soybean	cytosol, nucleus	30.77	6.71
KRG99083	Soybean	nucleus	28.85	6.16
Solyc09g061500.1.1	Tomato	cytosol	5.77	4.8
Solyc09g061580.1.1	Tomato	cytosol	4.81	4.31
Solyc09g061540.1.1	Tomato	cytosol	3.85	3.45
Solyc09g061370.1.1	Tomato	cytosol	5.77	3.09
Solyc09g061560.1.1	Tomato	mitochondrion	4.81	2.98
Solyc06g054200.1.1	Tomato	cytosol	5.77	2.71
Solyc09g059870.1.1	Tomato	cytosol	2.88	2.31
Solyc06g054180.1.1	Tomato	cytosol	3.85	1.62
Solyc06g054160.1.1	Tomato	cytosol, peroxisome, plastid	3.85	1.59
Solyc09g082130.2.1	Tomato	nucleus	4.81	1.21
Solyc09g082140.2.1	Tomato	cytosol, nucleus	2.88	0.91
Solyc09g060060.1.1	Tomato	cytosol	0.0	0.0
Solyc09g060020.1.1	Tomato	cytosol	0.0	0.0
Solyc09g059900.1.1	Tomato	cytosol	0.0	0.0
Solyc09g061590.1.1	Tomato	cytosol	0.0	0.0
Solyc09g061600.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc09g061360.1.1

EnsemblPlantsGene:Solyc09g061360.1

PANTHER:PTHR33345

UniParc:UPI000276BB41

UniProt:K4CTW9

MapMan:35.2

Description

No Description!

Coordinates

chr9:-:58938231..58938545

Molecular Weight (calculated)

11870.9 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.780

Length

104 amino acids

Sequence
(BLAST)

001: MLAKEEVGES LALFVDNESS STINEIRLQL YPVSEYEYGE GLPYAPVDRP NVGDKWGWRT GRRATNSGTF KDRYLYLPEH FQAPRDGKKN AFRSKTSVKK
101: ISPI

Best Arabidopsis Sequence Match ( AT1G05410.1 )
(BLAST)

001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D

Arabidopsis Description

At1g05410/T25N20_5 [Source:UniProtKB/TrEMBL;Acc:Q8VZE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.