Factsheet for Solyc12g096260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g064990.2.1
Solyc02g087300.1.1
Solyc02g090900.2.1
Solyc03g006800.1.1
Solyc05g040050.1.1
Solyc06g061020.2.1
Solyc06g067960.2.1
Solyc06g073150.2.1
Solyc06g074530.1.1
Solyc07g047690.1.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc11g017300.1.1
Solyc11g066890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07840.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G07840.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G07840.1	Solyc02g087300.1.1	AT3G01340.1	21798944
AT5G61230.1	Solyc05g040050.1.1	AT2G05230.1	21798944
AT5G61230.1	Solyc07g047690.1.1	AT2G05230.1	21798944
AT5G61230.1	Solyc05g040050.1.1	AT2G05250.1	21798944
AT5G61230.1	Solyc07g047690.1.1	AT2G05250.1	21798944
AT5G61230.1	Solyc06g067960.2.1	AT3G15660.1	21798944
AT5G61230.1	Solyc06g074530.1.1	AT3G44720.1	21798944
AT5G61230.1	Solyc11g066890.1.1	AT3G44720.1	21798944
AT5G61230.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT5G61230.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT5G61230.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT5G61230.1	Solyc02g064990.2.1	AT4G36970.1	21798944
AT5G61230.1	Solyc02g090900.2.1	AT4G36970.1	21798944
AT5G61230.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075540	Potato	cytosol, mitochondrion	78.91	66.45
Solyc08g005910.2.1	Tomato	cytosol	71.09	53.85
Zm00001d014925_P001	Maize	mitochondrion	64.06	49.4
EES06098	Sorghum	cytosol, mitochondrion	63.28	49.09
VIT_02s0087g00100.t01	Wine grape	cytosol	66.41	48.85
GSMUA_Achr9P23190_001	Banana	cytosol	65.62	48.84
Os02t0102600-01	Rice	cytosol, mitochondrion	62.5	48.19
HORVU6Hr1G001980.1	Barley	mitochondrion	62.5	47.9
KRH76405	Soybean	cytosol	64.06	47.67
TraesCS6D01G006600.1	Wheat	cytosol	61.72	47.02
TraesCS6B01G009600.1	Wheat	mitochondrion	61.72	46.75
TraesCS6A01G004600.1	Wheat	mitochondrion	61.72	46.75
KRH39707	Soybean	cytosol	62.5	46.51
TraesCS2B01G597300.1	Wheat	cytosol	60.94	46.43
CDY23077	Canola	cytosol	60.94	44.32
CDY02163	Canola	cytosol, mitochondrion	60.16	44.0
Bra012976.1-P	Field mustard	cytosol, mitochondrion	60.16	44.0
AT5G07840.1	Thale cress	cytosol	59.38	43.43
AT5G61230.1	Thale cress	cytosol, plastid	58.59	43.1
CDX87205	Canola	cytosol, mitochondrion	59.38	40.86
CDY16818	Canola	cytosol, mitochondrion	59.38	40.21

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0000151
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4DH99	PFAM:PF12796	PFAM:PF13606
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR45189	SMART:SM00248	SUPFAM:SSF48403	EnsemblPlantsGene:Solyc12g096260.1
EnsemblPlants:Solyc12g096260.1.1	UniParc:UPI0002769BAD	:	:	:	:

Description

No Description!

Coordinates

chr12:+:65266299..65267245

Molecular Weight (calculated)

14111.4 Da

IEP (calculated)

11.405

GRAVY (calculated)

-0.358

Length

128 amino acids

Sequence
(BLAST)

001: MQEKGLNISR GSRRMQIITG GYMDDRGWTL LHIVARKGDL KEVKRLLNEG MDANVTAGGR GPKSLGVTPL HLAAKGGHVR VMDALLERGA DIDARTRGVC
101: GWTPLHHAAK ERKKKAIRFL IRNGAFFV

Best Arabidopsis Sequence Match ( AT5G07840.1 )
(BLAST)

001: MLQEQPVALS FRPNSFRRRS METGVDRDDR GWTQLHIKAR EGDLKAVKEL LDQGADVNAL ACGPKSKGMT PLHLAAKGGH IEVMDLLLER GANMEARTSG
101: ACGWTPLHAA AKERKREAVK FLVGNGAFLP DDITDSRFNP PVQYCHGLEW AYEERKKLSE DTSLSCGDTS CSSAN

Arabidopsis Description

PIA1PIA1 [Source:UniProtKB/TrEMBL;Acc:A0A178UK09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.