Factsheet for Solyc02g064990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g066590.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc01g066590.2.1	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065490	Potato	nucleus	86.56	87.24
Solyc02g090900.2.1	Tomato	plastid	60.72	62.33
VIT_07s0031g00610.t01	Wine grape	plastid	49.87	48.01
GSMUA_Achr8P23340_001	Banana	plastid	42.12	40.05
Zm00001d017576_P001	Maize	nucleus, plastid	8.53	38.82
Zm00001d019245_P001	Maize	nucleus	8.53	38.82
Zm00001d020387_P001	Maize	nucleus, plastid	8.53	38.82
GSMUA_Achr5P05710_001	Banana	plastid	40.83	38.73
KRH77003	Soybean	nucleus, plastid	41.09	38.69
KRH57952	Soybean	nucleus	41.34	38.65
KRH04616	Soybean	nucleus	40.31	38.05
Zm00001d039978_P001	Maize	nucleus, plastid	8.27	37.65
CDX75626	Canola	nucleus, plastid	40.05	36.3
KRH28469	Soybean	nucleus, plastid	37.98	36.03
Bra011737.1-P	Field mustard	nucleus, plastid	39.28	35.68
AT4G36970.1	Thale cress	plastid	39.02	35.36
CDX69276	Canola	nucleus, plastid	37.98	34.75
Bra017801.1-P	Field mustard	plastid	32.3	33.07
CDY42723	Canola	nucleus, plastid	33.59	32.75
Solyc04g078810.2.1	Tomato	nucleus	46.77	31.31
Zm00001d005881_P002	Maize	nucleus	29.72	30.75
Os02t0767000-01	Rice	nucleus	38.76	29.59
Zm00001d010608_P001	Maize	nucleus	12.14	29.19
Zm00001d020329_P001	Maize	plastid	13.44	27.96
CDY67768	Canola	plastid	19.38	27.08
GSMUA_Achr3P07010_001	Banana	nucleus	39.79	26.92
KXG31173	Sorghum	nucleus	40.57	26.88
Zm00001d052157_P006	Maize	plastid	39.28	26.34
TraesCS6A01G333200.1	Wheat	nucleus	38.76	26.18
TraesCS6B01G363600.1	Wheat	nucleus	38.5	25.38
HORVU6Hr1G080620.6	Barley	nucleus	38.76	24.47
TraesCS5B01G235500.1	Wheat	nucleus	37.98	23.9
TraesCS5D01G244300.2	Wheat	nucleus	37.73	23.74
Os08t0471800-01	Rice	nucleus	36.69	23.59
TraesCS5A01G237300.2	Wheat	nucleus	37.73	23.47
KXG35763	Sorghum	nucleus	37.47	23.42
Zm00001d018179_P015	Maize	nucleus	37.98	23.3
HORVU5Hr1G068200.5	Barley	nucleus	36.95	23.25
Os09t0456100-01	Rice	nucleus	36.69	22.9
Zm00001d020708_P001	Maize	cytosol	35.92	22.6
TraesCS6D01G312000.1	Wheat	nucleus, plastid	38.24	20.79
KXG25311	Sorghum	nucleus	32.82	20.48
Zm00001d050017_P001	Maize	nucleus	32.56	18.78

Protein Annotations

EnsemblPlants:Solyc02g064990.2.1	EnsemblPlantsGene:Solyc02g064990.2	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF2
PFAM:PF03763	UniParc:UPI0002768A0D	UniProt:K4B6T4	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2:-:36118886..36121206

Molecular Weight (calculated)

42693.0 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.773

Length

387 amino acids

Sequence
(BLAST)

001: MRKHNTSLRN SGTYTSPSTP EYGDDHFEGF QKGWSSERVP LPTNSSRRHI TATALMPFNS GRALPSKWDD AERWITSPVS GYATPKASSN VQLQKQPKSK
101: SGPLENPGLM FMPNYSPSVL VHEGGNRSNF IANSPFTTGV LVPDGLSIHY GVGSGSSSSA LYVENNMARA STAPGLSDFF AESSLPSSQD DKAEDTKEPD
201: SISPVVSCRD MATQMSPDDS THSSPKGRSP SIRSIEEPND KRSAKLEIRD VQVDRGPPIS GELHRKGVRK TRKDLQDATD SNVRWDVADA ERSMPKLQRE
301: EARINAWENL QKAKAEAAIQ KLEVKLSKKR SASMDKILNK LKVSQLKAQK MRGSLSEGHQ TTSKTLFPFQ KFFKITSFSN CFYCGVE

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.