Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0256400-01 | |
| Os06t0492700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | Os01t0256400-01 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | Os06t0492700-00 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35763 | Sorghum | nucleus | 68.39 | 68.5 |
| Zm00001d020708_P001 | Maize | cytosol | 65.81 | 66.34 |
| Zm00001d005881_P002 | Maize | nucleus | 39.03 | 64.71 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 63.39 | 63.9 |
| TraesCS5A01G237300.2 | Wheat | nucleus | 63.23 | 63.02 |
| TraesCS5B01G235500.1 | Wheat | nucleus | 62.1 | 62.6 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 62.1 | 62.6 |
| Os08t0471800-01 | Rice | nucleus | 53.71 | 55.32 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 25.97 | 40.05 |
| VIT_18s0001g10420.t01 | Wine grape | nucleus | 36.29 | 39.47 |
| KRH66111 | Soybean | nucleus | 12.58 | 39.2 |
| PGSC0003DMT400010346 | Potato | plastid | 23.39 | 38.36 |
| Os02t0767000-01 | Rice | nucleus | 31.29 | 38.26 |
| KRH57952 | Soybean | nucleus | 25.0 | 37.44 |
| Solyc02g090900.2.1 | Tomato | plastid | 22.74 | 37.4 |
| Solyc02g064990.2.1 | Tomato | nucleus | 22.9 | 36.69 |
| KRH77003 | Soybean | nucleus, plastid | 24.19 | 36.5 |
| PGSC0003DMT400065490 | Potato | nucleus | 22.58 | 36.46 |
| KRH52008 | Soybean | mitochondrion | 27.9 | 36.27 |
| KRH04616 | Soybean | nucleus | 23.87 | 36.1 |
| PGSC0003DMT400020667 | Potato | nucleus | 33.55 | 35.92 |
| KRH28469 | Soybean | nucleus, plastid | 23.55 | 35.78 |
| Bra017801.1-P | Field mustard | plastid | 21.61 | 35.45 |
| Solyc04g078810.2.1 | Tomato | nucleus | 32.74 | 35.12 |
| CDY42723 | Canola | nucleus, plastid | 22.26 | 34.76 |
| KRH15372 | Soybean | nucleus | 33.71 | 34.21 |
| PGSC0003DMT400020663 | Potato | nucleus | 28.06 | 33.92 |
| KRH05674 | Soybean | nucleus | 32.58 | 33.17 |
| Bra011737.1-P | Field mustard | nucleus, plastid | 22.74 | 33.1 |
| CDX69276 | Canola | nucleus, plastid | 22.58 | 33.1 |
| CDX75626 | Canola | nucleus, plastid | 22.58 | 32.79 |
| AT4G36970.1 | Thale cress | plastid | 22.26 | 32.32 |
| AT1G45207.2 | Thale cress | nucleus, plastid | 28.55 | 31.89 |
| CDY67768 | Canola | plastid | 14.03 | 31.41 |
| Bra014045.1-P | Field mustard | nucleus, plastid | 25.81 | 31.07 |
| CDY17058 | Canola | nucleus, plastid | 25.65 | 30.87 |
| CDY43217 | Canola | nucleus | 25.65 | 30.81 |
Protein Annotations
| EnsemblPlants:Os09t0456100-01 | EnsemblPlantsGene:Os09g0456100 | EntrezGene:4347256 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF21 | PFAM:PF03763 | ProteinID:BAD38292.1 | ProteinID:BAD38465.1 | ProteinID:BAF25275.1 | ProteinID:BAT08431.1 |
| RefSeq:XP_015610791.1 | RefSeq:XP_015610792.1 | SEG:seg | UniParc:UPI0000426516 | UniProt:Q67TQ6 | MapMan:35.2 |
Description
REMORIN 5.3Remorin, C-terminal region domain containing protein. (Os09t0456100-01);Hypothetical conserved gene. (Os09t0456100-02)
Coordinates
chr9:+:17182867..17188315
Molecular Weight (calculated)
67342.6 Da
IEP (calculated)
9.445
GRAVY (calculated)
-0.674
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MERMRCVGGG DTPLGFRGVV EEELEEEVAA VSASGRPMQR QRRRRRRWGE DADDGYSASS TGGGGSSGCG SFGCDSPLAG FVRADGDPDT DLETDGVATP
101: SSNASAAFAE PHDEEEGDEV LCGVVEGDWA QLQEPTKSPA DRTTGECLYQ RRRSEAVLLQ GRKGLKQRPA SLDFGSGSPG FNGAPLSPGF VVGGVGLMNK
201: GLVSSSFIRS DVFPSPRTPN YRRHRSSVFG YQKGWSSERV PLASKGNRRY PGSSMAFPFS NGRTLPSKWE DAERWIFSPN SSDVLEKTSF APARRPKSKS
301: GPLGPPGKFG GQYSSVSLLD NGRVGHLTAN SPFLAGVLIP EHYCGEKDNI GRYMSRTAGE EASIGIGGKS CLANGGSHAT QYNRVRRRLD TAIESSPSLP
401: STQASVQDEQ VGITEESASI ITPIILRKDA ATQTSPNLSR SSSPSVSTPF IHLLTTHQVR EKENCFSDVI RDVHMDDRVT LTRWSKKHVT RASSKNSTNV
501: IDVKKKTVES KSSSWELTEA KSISKVEREQ EKITAWEHLQ KAKAEAAIQK LVMKIEKKRS SSLDKIWNTL RSAQRRAQVM RETAAANQDE QSSGKAKRTS
601: HLNKNGQISS LSGCFTCHAF
101: SSNASAAFAE PHDEEEGDEV LCGVVEGDWA QLQEPTKSPA DRTTGECLYQ RRRSEAVLLQ GRKGLKQRPA SLDFGSGSPG FNGAPLSPGF VVGGVGLMNK
201: GLVSSSFIRS DVFPSPRTPN YRRHRSSVFG YQKGWSSERV PLASKGNRRY PGSSMAFPFS NGRTLPSKWE DAERWIFSPN SSDVLEKTSF APARRPKSKS
301: GPLGPPGKFG GQYSSVSLLD NGRVGHLTAN SPFLAGVLIP EHYCGEKDNI GRYMSRTAGE EASIGIGGKS CLANGGSHAT QYNRVRRRLD TAIESSPSLP
401: STQASVQDEQ VGITEESASI ITPIILRKDA ATQTSPNLSR SSSPSVSTPF IHLLTTHQVR EKENCFSDVI RDVHMDDRVT LTRWSKKHVT RASSKNSTNV
501: IDVKKKTVES KSSSWELTEA KSISKVEREQ EKITAWEHLQ KAKAEAAIQK LVMKIEKKRS SSLDKIWNTL RSAQRRAQVM RETAAANQDE QSSGKAKRTS
601: HLNKNGQISS LSGCFTCHAF
001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.