Factsheet for VIT_07s0031g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0077g02110.t01
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT4G36970.1	VIT_05s0077g02110.t01	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010346	Potato	plastid	48.76	51.85
GSMUA_Achr5P05710_001	Banana	plastid	50.75	50.0
GSMUA_Achr8P23340_001	Banana	plastid	50.5	49.88
Solyc02g064990.2.1	Tomato	nucleus	48.01	49.87
Solyc02g090900.2.1	Tomato	plastid	46.02	49.07
PGSC0003DMT400065490	Potato	nucleus	46.77	48.96
KRH77003	Soybean	nucleus, plastid	47.01	45.99
Zm00001d020387_P001	Maize	nucleus, plastid	9.45	44.71
Zm00001d019245_P001	Maize	nucleus	9.45	44.71
Zm00001d017576_P001	Maize	nucleus, plastid	9.45	44.71
KRH28469	Soybean	nucleus, plastid	45.02	44.36
KRH57952	Soybean	nucleus	45.52	44.2
Zm00001d039978_P001	Maize	nucleus, plastid	9.2	43.53
KRH04616	Soybean	nucleus	44.03	43.17
CDX69276	Canola	nucleus, plastid	42.29	40.19
AT4G36970.1	Thale cress	plastid	42.29	39.81
VIT_18s0001g10420.t01	Wine grape	nucleus	56.22	39.65
CDX75626	Canola	nucleus, plastid	41.29	38.88
Bra011737.1-P	Field mustard	nucleus, plastid	41.04	38.73
Bra017801.1-P	Field mustard	plastid	36.32	38.62
CDY42723	Canola	nucleus, plastid	37.31	37.78
Os02t0767000-01	Rice	nucleus	45.52	36.09
Zm00001d010608_P001	Maize	nucleus	14.43	36.02
GSMUA_Achr3P07010_001	Banana	nucleus	50.0	35.14
Zm00001d005881_P002	Maize	nucleus	32.59	35.03
CDY67768	Canola	plastid	24.13	35.02
TraesCS6A01G333200.1	Wheat	nucleus	45.27	31.76
Zm00001d020329_P001	Maize	plastid	14.68	31.72
KXG31173	Sorghum	nucleus	45.77	31.51
Zm00001d052157_P006	Maize	plastid	45.02	31.37
TraesCS6B01G363600.1	Wheat	nucleus	45.52	31.18
HORVU6Hr1G080620.6	Barley	nucleus	45.77	30.02
Zm00001d018179_P015	Maize	nucleus	43.53	27.73
TraesCS5B01G235500.1	Wheat	nucleus	41.29	26.99
TraesCS5D01G244300.2	Wheat	nucleus	41.29	26.99
Os08t0471800-01	Rice	nucleus	40.3	26.91
TraesCS5A01G237300.2	Wheat	nucleus	41.29	26.69
HORVU5Hr1G068200.5	Barley	nucleus	40.3	26.34
KXG35763	Sorghum	nucleus	40.05	26.01
Os09t0456100-01	Rice	nucleus	40.05	25.97
TraesCS6D01G312000.1	Wheat	nucleus, plastid	45.77	25.84
Zm00001d020708_P001	Maize	cytosol	38.81	25.37
KXG25311	Sorghum	nucleus	36.82	23.87
Zm00001d050017_P001	Maize	nucleus	36.07	21.61

Protein Annotations

EntrezGene:100252502	wikigene:100252502	MapMan:35.2	ProteinID:CCB47066	ProteinID:CCB47066.1	ncoils:Coil
UniProt:F6H4K2	EMBL:FN595233	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	EntrezGene:LOC100252502	wikigene:LOC100252502
PFAM:PF03763	PANTHER:PTHR31471	PANTHER:PTHR31471:SF2	InterPro:Remorin_C	TIGR:TC58093	UniParc:UPI00015C9E79
ArrayExpress:VIT_07s0031g00610	EnsemblPlantsGene:VIT_07s0031g00610	EnsemblPlants:VIT_07s0031g00610.t01	unigene:Vvi.14751	RefSeq:XP_002282548	RefSeq:XP_002282548.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:16790229..16794218

Molecular Weight (calculated)

43418.1 Da

IEP (calculated)

10.135

GRAVY (calculated)

-0.714

Length

402 amino acids

Sequence
(BLAST)

001: MKKSAVTSHN LGSFPSPGTS NYGDGSGGVP KGWSSERVPP SVNSGRRYIG GSTLMPFNSG RALPSKWEDA ERWISSPVSG YSVNKSSLAQ PQRRPKSKSG
101: PLGLPGVAYN PNYSPAMPVF DGGGVRNFMG PSSPFSTGVM VAEGLSLHYG AGNGGQPHPV PNEHSMERSI SIPGWSDFLS ESSSPNSQDE KLGGSKDAET
201: MVSPVVSRRD IATQMSPDSN THSSPKDRFS FPPSPLLPTL EQQTHSVKSE VRDVQVDKGV TMIRWSKKHG AKTTMRAPPD VEETDKNAAE AQASSWDIAE
301: PSKNILKLKR EEAKITAWEN LQKAKAEAAI QKLEMKLEKK RAASMDKILS KLRMAEMKAE EMRSSISESQ ANQDSKTSHK VASFRKNVQK GSLGGCFTCH
401: AV

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.