CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH40946
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	KRH16959	AT3G49580.1	21798944
AT4G36970.1	KRH53667	AT3G49580.1	21798944
AT4G36970.1	KRH64261	AT3G49580.1	21798944
AT4G36970.1	KRH40946	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77003	Soybean	nucleus, plastid	83.82	83.21
KRH57952	Soybean	nucleus	52.7	51.93
KRH04616	Soybean	nucleus	49.26	49.02
VIT_07s0031g00610.t01	Wine grape	plastid	44.36	45.02
PGSC0003DMT400010346	Potato	plastid	37.25	40.21
GSMUA_Achr5P05710_001	Banana	plastid	39.46	39.46
GSMUA_Achr8P23340_001	Banana	plastid	38.73	38.82
Solyc02g090900.2.1	Tomato	plastid	35.78	38.73
Solyc02g064990.2.1	Tomato	nucleus	36.03	37.98
PGSC0003DMT400065490	Potato	nucleus	35.54	37.76
Bra017801.1-P	Field mustard	plastid	33.09	35.71
CDY42723	Canola	nucleus, plastid	33.82	34.76
CDX69276	Canola	nucleus, plastid	35.78	34.52
AT4G36970.1	Thale cress	plastid	35.78	34.19
CDX75626	Canola	nucleus, plastid	35.29	33.72
Bra011737.1-P	Field mustard	nucleus, plastid	35.05	33.57
Zm00001d005881_P002	Maize	nucleus	29.17	31.82
CDY67768	Canola	plastid	21.57	31.77
Zm00001d017576_P001	Maize	nucleus, plastid	6.62	31.76
Zm00001d019245_P001	Maize	nucleus	6.62	31.76
Zm00001d020387_P001	Maize	nucleus, plastid	6.62	31.76
Os02t0767000-01	Rice	nucleus	38.48	30.97
KRH52008	Soybean	mitochondrion	35.78	30.61
Zm00001d039978_P001	Maize	nucleus, plastid	6.37	30.59
KRH66111	Soybean	nucleus	14.22	29.15
KXG31173	Sorghum	nucleus	39.46	27.57
Zm00001d010608_P001	Maize	nucleus	10.78	27.33
TraesCS6A01G333200.1	Wheat	nucleus	37.99	27.05
Zm00001d052157_P006	Maize	plastid	38.24	27.04
GSMUA_Achr3P07010_001	Banana	nucleus	37.75	26.92
TraesCS6B01G363600.1	Wheat	nucleus	38.24	26.58
KRH05674	Soybean	nucleus	39.22	26.27
KRH15372	Soybean	nucleus	38.97	26.02
HORVU6Hr1G080620.6	Barley	nucleus	38.48	25.61
Zm00001d020329_P001	Maize	plastid	11.52	25.27
TraesCS5D01G244300.2	Wheat	nucleus	36.52	24.23
Os08t0471800-01	Rice	nucleus	35.54	24.09
TraesCS5B01G235500.1	Wheat	nucleus	36.27	24.07
HORVU5Hr1G068200.5	Barley	nucleus	35.78	23.74
TraesCS5A01G237300.2	Wheat	nucleus	36.03	23.63
Zm00001d018179_P015	Maize	nucleus	36.52	23.61
Os09t0456100-01	Rice	nucleus	35.78	23.55
KXG35763	Sorghum	nucleus	34.8	22.94
TraesCS6D01G312000.1	Wheat	nucleus, plastid	38.24	21.91
Zm00001d020708_P001	Maize	cytosol	32.84	21.79
KXG25311	Sorghum	nucleus	30.15	19.84
Zm00001d050017_P001	Maize	nucleus	29.66	18.03

Protein Annotations

EMBL:ACUP02006753	EnsemblPlants:KRH28469	EnsemblPlantsGene:GLYMA_11G055600	EntrezGene:100816437	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF2	PFAM:PF03763	ProteinID:KRH28469	ProteinID:KRH28469.1	SEG:seg
UniParc:UPI000233C50F	UniProt:K7LN76	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:4200285..4203022

Molecular Weight (calculated)

45526.6 Da

IEP (calculated)

9.596

GRAVY (calculated)

-0.774

Length

408 amino acids

Sequence
(BLAST)

001: MKKSSGTSQK LGSFLSPGAP NYREKSIGSQ KGWSSERVLL QPSSNSIRNA SVANLTPFNS GRTIPSKWDD AERWICSPVS GYANNKTNSY TQLQQRRPKS
101: KSGPIMPPGT GYYSNYSPTI PLSQGLVVKN FMMGGSPFST GVLAPDAISL HHYYAHEAVF GTRYDFDNSM QCFSPFLNEN SVALPSVSSA PMWSELLCDP
201: SPNSQDEKRN EIKNEDTVTS PLSKCDKGTQ MSPPEPENDA PTSTMDQQNN LSAKLEVRDV EIDSEASIIR WSKSHVPKLS LLPGKHSRKI SRTETKASGL
301: DNAESTLDSS KIQREEAKIV AWESLQKAKA EAEIRKLEMK LEKKKSSSMD KIQSKLRRAQ MEAEKMRNQI TVEEEGQQVS KTRKVFSFHK YAQIWFPRSC
401: FGTHALHD

Best Arabidopsis Sequence Match ( AT1G45207.2 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.