Factsheet for Os08t0471800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0256400-01
Os06t0492700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Os01t0256400-01	AT4G15930.1	21798944
AT4G36970.1	Os06t0492700-00	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020387_P001	Maize	nucleus, plastid	10.63	75.29
Zm00001d017576_P001	Maize	nucleus, plastid	10.63	75.29
Zm00001d039978_P001	Maize	nucleus, plastid	10.47	74.12
Zm00001d019245_P001	Maize	nucleus	10.47	74.12
KXG25311	Sorghum	nucleus	59.47	57.74
Os09t0456100-01	Rice	nucleus	55.32	53.71
Zm00001d050017_P001	Maize	nucleus	57.97	52.01
Zm00001d010608_P001	Maize	nucleus	13.46	50.31
Zm00001d020329_P001	Maize	plastid	13.46	43.55
VIT_07s0031g00610.t01	Wine grape	plastid	26.91	40.3
Os02t0767000-01	Rice	nucleus	33.06	39.25
VIT_18s0001g10420.t01	Wine grape	nucleus	35.71	37.72
Solyc02g090900.2.1	Tomato	plastid	23.59	37.67
PGSC0003DMT400010346	Potato	plastid	23.59	37.57
Solyc02g064990.2.1	Tomato	nucleus	23.59	36.69
KRH52008	Soybean	mitochondrion	28.74	36.27
KRH57952	Soybean	nucleus	24.58	35.75
PGSC0003DMT400065490	Potato	nucleus	22.76	35.68
Solyc04g078810.2.1	Tomato	nucleus	34.22	35.64
KRH28469	Soybean	nucleus, plastid	24.09	35.54
KRH04616	Soybean	nucleus	24.09	35.37
KRH77003	Soybean	nucleus, plastid	24.09	35.28
PGSC0003DMT400020667	Potato	nucleus	33.89	35.23
PGSC0003DMT400020663	Potato	nucleus	29.07	34.11
KRH15372	Soybean	nucleus	34.55	34.04
KRH66111	Soybean	nucleus	11.13	33.67
Bra017801.1-P	Field mustard	plastid	20.93	33.33
Bra011737.1-P	Field mustard	nucleus, plastid	23.42	33.1
KRH05674	Soybean	nucleus	33.22	32.84
CDY42723	Canola	nucleus, plastid	21.59	32.75
CDX69276	Canola	nucleus, plastid	22.76	32.39
CDX75626	Canola	nucleus, plastid	22.92	32.32
AT1G45207.2	Thale cress	nucleus, plastid	29.73	32.25
AT4G36970.1	Thale cress	plastid	22.59	31.85
Bra014045.1-P	Field mustard	nucleus, plastid	27.08	31.65
CDY43217	Canola	nucleus	27.08	31.59
CDY17058	Canola	nucleus, plastid	26.91	31.46
CDY67768	Canola	plastid	13.46	29.24

Protein Annotations

EMBL:AK105281	EnsemblPlants:Os08t0471800-01	EnsemblPlantsGene:Os08g0471800	EntrezGene:4345805	InterPro:Remorin_C	PANTHER:PTHR31471
PANTHER:PTHR31471:SF37	PFAM:PF03763	ProteinID:BAD09354.1	ProteinID:BAD09867.1	ProteinID:BAF23930.1	ProteinID:BAT05848.1
RefSeq:XP_015648884.1	SEG:seg	UniParc:UPI000023ADD0	UniProt:Q6Z9R1	MapMan:35.2	:

Description

REMORIN 5.2Remorin, C-terminal region domain containing protein. (Os08t0471800-01)

Coordinates

chr8:+:23213213..23217399

Molecular Weight (calculated)

64255.8 Da

IEP (calculated)

9.996

GRAVY (calculated)

-0.726

Length

602 amino acids

Sequence
(BLAST)

001: MRVGGELHSG GGGGEGVLVG RGWRKEEAEG GGGGGGGGGG CSASSTSRGS SLCDSPLPSF VRHRGGPGSD LELDGLPTSS SNASSGSHEE DHGPLQGVKG
101: EGWMQVQGPI KNSAARSTGE CQDQRYRLGS VLFHGKNERK QRPASVDFGC PSVDRSSTHS PGFLVNGTGA MNKGLSVSSQ NKPGAPTSPG TPSYNRQGAT
201: VVGYQQGWSS ERVALSSNGQ RRHSGNSMVL PHNTGRTLPS KWEDAERWIF SPNPSNALGR TSIPQSRRPK AKSGPLGPPG RFSEPYSSVS SSSYLLDTGR
301: VGNLTANSPF LAGVLLPEHV CVSSSHAGRD LSGASGEDKS NGMGGRSGEA NGAHPAVWST RVCQRMDSAV QSSPSLPTSQ ESVQACTDEQ IEITTDLTTS
401: SKPEISRKDV ATQTSPELSR SSSPSGRPSF SRSLSVQQVK ELESCFSKLE IRDVQMDDRV TLTRWSKKHV TRGSEKNSTN IIEWKKKTVE SKSSAWEVTE
501: TAKCISKIEG EEAKMTAWEN LQKAKAEAAI QKLVMKLEKK RSYSLERIFN TLRSAHRKTH VIRSTTTTNL DQHISRTVKR PSHLSKNGQM SSLSGCFTCH
601: AF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.