Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | KRH16959 | AT3G49580.1 | 21798944 |
| AT4G36970.1 | KRH53667 | AT3G49580.1 | 21798944 |
| AT4G36970.1 | KRH64261 | AT3G49580.1 | 21798944 |
| AT4G36970.1 | KRH40946 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28469 | Soybean | nucleus, plastid | 83.21 | 83.82 |
| KRH57952 | Soybean | nucleus | 53.04 | 52.66 |
| KRH04616 | Soybean | nucleus | 47.93 | 48.05 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 45.99 | 47.01 |
| PGSC0003DMT400010346 | Potato | plastid | 39.42 | 42.86 |
| Solyc02g090900.2.1 | Tomato | plastid | 38.2 | 41.64 |
| GSMUA_Achr5P05710_001 | Banana | plastid | 40.88 | 41.18 |
| Solyc02g064990.2.1 | Tomato | nucleus | 38.69 | 41.09 |
| PGSC0003DMT400065490 | Potato | nucleus | 38.2 | 40.89 |
| GSMUA_Achr8P23340_001 | Banana | plastid | 39.66 | 40.05 |
| Bra017801.1-P | Field mustard | plastid | 33.33 | 36.24 |
| AT4G36970.1 | Thale cress | plastid | 37.23 | 35.83 |
| CDX69276 | Canola | nucleus, plastid | 36.5 | 35.46 |
| Zm00001d020387_P001 | Maize | nucleus, plastid | 7.3 | 35.29 |
| Zm00001d019245_P001 | Maize | nucleus | 7.3 | 35.29 |
| Zm00001d017576_P001 | Maize | nucleus, plastid | 7.3 | 35.29 |
| CDY42723 | Canola | nucleus, plastid | 33.82 | 35.01 |
| CDX75626 | Canola | nucleus, plastid | 35.77 | 34.43 |
| Bra011737.1-P | Field mustard | nucleus, plastid | 35.52 | 34.27 |
| Zm00001d039978_P001 | Maize | nucleus, plastid | 7.06 | 34.12 |
| CDY67768 | Canola | plastid | 22.38 | 33.21 |
| Zm00001d005881_P002 | Maize | nucleus | 29.44 | 32.35 |
| KRH52008 | Soybean | mitochondrion | 36.25 | 31.24 |
| Os02t0767000-01 | Rice | nucleus | 38.44 | 31.16 |
| KRH66111 | Soybean | nucleus | 14.6 | 30.15 |
| Zm00001d010608_P001 | Maize | nucleus | 11.68 | 29.81 |
| GSMUA_Achr3P07010_001 | Banana | nucleus | 39.9 | 28.67 |
| TraesCS6A01G333200.1 | Wheat | nucleus | 38.93 | 27.92 |
| KXG31173 | Sorghum | nucleus | 39.42 | 27.74 |
| TraesCS6B01G363600.1 | Wheat | nucleus | 39.42 | 27.6 |
| Zm00001d052157_P006 | Maize | plastid | 38.69 | 27.56 |
| KRH15372 | Soybean | nucleus | 40.15 | 27.0 |
| KRH05674 | Soybean | nucleus | 39.9 | 26.93 |
| HORVU6Hr1G080620.6 | Barley | nucleus | 39.42 | 26.43 |
| Zm00001d020329_P001 | Maize | plastid | 11.92 | 26.34 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 36.5 | 24.39 |
| TraesCS5B01G235500.1 | Wheat | nucleus | 36.5 | 24.39 |
| Zm00001d018179_P015 | Maize | nucleus | 37.23 | 24.25 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 36.25 | 24.23 |
| Os09t0456100-01 | Rice | nucleus | 36.5 | 24.19 |
| Os08t0471800-01 | Rice | nucleus | 35.28 | 24.09 |
| TraesCS5A01G237300.2 | Wheat | nucleus | 36.25 | 23.95 |
| KXG35763 | Sorghum | nucleus | 35.28 | 23.42 |
| TraesCS6D01G312000.1 | Wheat | nucleus, plastid | 39.42 | 22.75 |
| Zm00001d020708_P001 | Maize | cytosol | 33.82 | 22.6 |
| KXG25311 | Sorghum | nucleus | 30.17 | 20.0 |
| Zm00001d050017_P001 | Maize | nucleus | 29.44 | 18.03 |
Protein Annotations
| EMBL:ACUP02000650 | EnsemblPlants:KRH77003 | EnsemblPlantsGene:GLYMA_01G186300 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF2 | PFAM:PF03763 | ProteinID:KRH77003 | ProteinID:KRH77003.1 | SEG:seg | UniParc:UPI0002336FD9 |
| UniProt:I1J970 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:52174011..52177210
Molecular Weight (calculated)
45647.7 Da
IEP (calculated)
9.959
GRAVY (calculated)
-0.788
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKSSGSSQK LGSFLSPGAP NYSEKSIGSQ KGWSSERVLL QPSSSNIRNA SVANLTPFNS GRTIPSKWDD AERWICSPVS GYSNNKTNSY AQLQQRRPKS
101: KSGPIMPPGT GYYSNYSPTI PLRQGLVVKN FMMGGSPFST GVLAPDAISL HHYYSHEAVF GHRYDFDNSM QCSSPLLNEN SVALPSVSSA PMWSELLCDP
201: SSPNSQDEKR KETKNADDVT SLSKCDKGTQ MSPPETENDA PKSSPNSTMD QQNYLSAKLE VRDVEIDREA TTVRWSKSHV PKLSLLPGIH SRKSSRTEAK
301: ASGLDIADST LDSSKIQREE AKIVAWESLQ KAKAEAEIRK LEMKLEKKKS SSMDKILNKL RRAQMKAEKM RNQITVQEGQ QVSNTRKVFS FHKYAQIWSP
401: RSCFGTHALH D
101: KSGPIMPPGT GYYSNYSPTI PLRQGLVVKN FMMGGSPFST GVLAPDAISL HHYYSHEAVF GHRYDFDNSM QCSSPLLNEN SVALPSVSSA PMWSELLCDP
201: SSPNSQDEKR KETKNADDVT SLSKCDKGTQ MSPPETENDA PKSSPNSTMD QQNYLSAKLE VRDVEIDREA TTVRWSKSHV PKLSLLPGIH SRKSSRTEAK
301: ASGLDIADST LDSSKIQREE AKIVAWESLQ KAKAEAEIRK LEMKLEKKKS SSMDKILNKL RRAQMKAEKM RNQITVQEGQ QVSNTRKVFS FHKYAQIWSP
401: RSCFGTHALH D
001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.