Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G175300.1 | |
| TraesCS3B01G205000.1 | |
| TraesCS3D01G180700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | TraesCS3A01G175300.1 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | TraesCS3B01G205000.1 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | TraesCS3D01G180700.1 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G237300.2 | Wheat | nucleus | 94.31 | 93.25 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 92.68 | 92.68 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 86.99 | 86.99 |
| Zm00001d005881_P002 | Maize | nucleus | 38.54 | 63.37 |
| Os09t0456100-01 | Rice | nucleus | 62.6 | 62.1 |
| KXG35763 | Sorghum | nucleus | 61.95 | 61.55 |
| Zm00001d020708_P001 | Maize | cytosol | 60.98 | 60.98 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 26.99 | 41.29 |
| VIT_18s0001g10420.t01 | Wine grape | nucleus | 35.94 | 38.77 |
| Solyc02g090900.2.1 | Tomato | plastid | 23.74 | 38.73 |
| Solyc02g064990.2.1 | Tomato | nucleus | 23.9 | 37.98 |
| KRH52008 | Soybean | mitochondrion | 29.11 | 37.53 |
| PGSC0003DMT400010346 | Potato | plastid | 22.93 | 37.3 |
| KRH57952 | Soybean | nucleus | 24.88 | 36.96 |
| KRH77003 | Soybean | nucleus, plastid | 24.39 | 36.5 |
| PGSC0003DMT400065490 | Potato | nucleus | 22.76 | 36.46 |
| KRH28469 | Soybean | nucleus, plastid | 24.07 | 36.27 |
| KRH04616 | Soybean | nucleus | 24.07 | 36.1 |
| Solyc04g078810.2.1 | Tomato | nucleus | 33.82 | 35.99 |
| TraesCS6B01G363600.1 | Wheat | nucleus | 34.31 | 35.95 |
| KRH66111 | Soybean | nucleus | 11.54 | 35.68 |
| PGSC0003DMT400020667 | Potato | nucleus | 33.5 | 35.58 |
| Bra017801.1-P | Field mustard | plastid | 21.46 | 34.92 |
| KRH15372 | Soybean | nucleus | 34.63 | 34.86 |
| CDY42723 | Canola | nucleus, plastid | 22.28 | 34.51 |
| KRH05674 | Soybean | nucleus | 33.33 | 33.66 |
| PGSC0003DMT400020663 | Potato | nucleus | 27.97 | 33.53 |
| AT4G36970.1 | Thale cress | plastid | 23.25 | 33.49 |
| CDX69276 | Canola | nucleus, plastid | 22.93 | 33.33 |
| AT1G45207.2 | Thale cress | nucleus, plastid | 29.92 | 33.15 |
| Bra011737.1-P | Field mustard | nucleus, plastid | 22.93 | 33.1 |
| CDX75626 | Canola | nucleus, plastid | 22.93 | 33.02 |
| CDY17058 | Canola | nucleus, plastid | 26.18 | 31.26 |
| Bra014045.1-P | Field mustard | nucleus, plastid | 26.18 | 31.26 |
| CDY67768 | Canola | plastid | 13.98 | 31.05 |
| CDY43217 | Canola | nucleus | 26.02 | 31.01 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G235500.1 | EnsemblPlantsGene:TraesCS5B01G235500 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF21 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:415795801..415799422
Molecular Weight (calculated)
66268.0 Da
IEP (calculated)
9.990
GRAVY (calculated)
-0.712
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGAGDCELE LRGVMGEEEG VASASASASE RAMRRRRGRR RWGRAEAGDS YSTSSGSGSF GCDSPLAGFV RADGDMDTDL ETDGLAATSS SSASAAFTEP
101: HDDEEEAQCG VKGEWQEPAK SPAGGATAIR ECQSQRRCRT EAAYLHGRKG LKQRPASLDF GSAGFNSGTP FSPGFVVGGA GFVSKGLVSS QISSGVFPSP
201: GTPSYPRRHR PSALGYQKGW SSERVPLPSK GNNTRRYPGS SMAFPLNNRR TLPSKWEDAE RWIFSPKSNS GDAREKTATL PHARRPKAKS GPLGPPGRLG
301: GQYSSVSSSV SLFDSGRVGH LAANSPFLAG VLIPEHYGGA KSNVGRYTSG TAGTEFGIGI VGRSSLADIG SPATQSTTVR RRLDTAVESS ASLPSTQESV
401: QDEEAEFVED SAPIITPITS RKDTATQTSP DLSRSSSPSA RPSFVRSFSM QQAKERESCF SDLEIRDVQM DERVSLTRWS KKHVTQGSNK NSTNMLEWNK
501: KTVDSKSSSW ESSETKCTLK VEREEAKLTA WENLQKAKAE AAIQKLVMKL EKKRSFSLDR ILNTLRSAQR KAQGMRDAAT ASQDEHLCRK AKKTSHVTKN
601: GQIRSLSGCF TCHAF
101: HDDEEEAQCG VKGEWQEPAK SPAGGATAIR ECQSQRRCRT EAAYLHGRKG LKQRPASLDF GSAGFNSGTP FSPGFVVGGA GFVSKGLVSS QISSGVFPSP
201: GTPSYPRRHR PSALGYQKGW SSERVPLPSK GNNTRRYPGS SMAFPLNNRR TLPSKWEDAE RWIFSPKSNS GDAREKTATL PHARRPKAKS GPLGPPGRLG
301: GQYSSVSSSV SLFDSGRVGH LAANSPFLAG VLIPEHYGGA KSNVGRYTSG TAGTEFGIGI VGRSSLADIG SPATQSTTVR RRLDTAVESS ASLPSTQESV
401: QDEEAEFVED SAPIITPITS RKDTATQTSP DLSRSSSPSA RPSFVRSFSM QQAKERESCF SDLEIRDVQM DERVSLTRWS KKHVTQGSNK NSTNMLEWNK
501: KTVDSKSSSW ESSETKCTLK VEREEAKLTA WENLQKAKAE AAIQKLVMKL EKKRSFSLDR ILNTLRSAQR KAQGMRDAAT ASQDEHLCRK AKKTSHVTKN
601: GQIRSLSGCF TCHAF
001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.