Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008330_P001 | |
| Zm00001d040291_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | Zm00001d008330_P001 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | Zm00001d040291_P001 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35763 | Sorghum | nucleus | 89.92 | 89.34 |
| Zm00001d005881_P002 | Maize | nucleus | 47.97 | 78.88 |
| Os09t0456100-01 | Rice | nucleus | 66.34 | 65.81 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 62.11 | 62.11 |
| Zm00001d039978_P001 | Maize | nucleus, plastid | 8.46 | 61.18 |
| Zm00001d020387_P001 | Maize | nucleus, plastid | 8.46 | 61.18 |
| Zm00001d017576_P001 | Maize | nucleus, plastid | 8.46 | 61.18 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 61.14 | 61.14 |
| TraesCS5B01G235500.1 | Wheat | nucleus | 60.98 | 60.98 |
| TraesCS5A01G237300.2 | Wheat | nucleus | 60.98 | 60.29 |
| Zm00001d019245_P001 | Maize | nucleus | 8.29 | 60.0 |
| Zm00001d050017_P001 | Maize | nucleus | 44.55 | 40.83 |
| Zm00001d010608_P001 | Maize | nucleus | 10.57 | 40.37 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 25.37 | 38.81 |
| VIT_18s0001g10420.t01 | Wine grape | nucleus | 35.45 | 38.25 |
| Zm00001d020329_P001 | Maize | plastid | 11.38 | 37.63 |
| PGSC0003DMT400010346 | Potato | plastid | 22.93 | 37.3 |
| Solyc02g090900.2.1 | Tomato | plastid | 22.28 | 36.34 |
| KRH57952 | Soybean | nucleus | 24.39 | 36.23 |
| Zm00001d052157_P006 | Maize | plastid | 33.82 | 36.05 |
| Solyc02g064990.2.1 | Tomato | nucleus | 22.6 | 35.92 |
| Solyc04g078810.2.1 | Tomato | nucleus | 33.66 | 35.81 |
| PGSC0003DMT400020667 | Potato | nucleus | 33.5 | 35.58 |
| KRH52008 | Soybean | mitochondrion | 27.48 | 35.43 |
| KRH04616 | Soybean | nucleus | 23.58 | 35.37 |
| KRH66111 | Soybean | nucleus | 11.38 | 35.18 |
| PGSC0003DMT400065490 | Potato | nucleus | 21.63 | 34.64 |
| KRH15372 | Soybean | nucleus | 33.82 | 34.04 |
| Bra017801.1-P | Field mustard | plastid | 20.81 | 33.86 |
| KRH77003 | Soybean | nucleus, plastid | 22.6 | 33.82 |
| PGSC0003DMT400020663 | Potato | nucleus | 27.97 | 33.53 |
| CDY42723 | Canola | nucleus, plastid | 21.63 | 33.5 |
| KRH05674 | Soybean | nucleus | 32.85 | 33.17 |
| CDX75626 | Canola | nucleus, plastid | 22.93 | 33.02 |
| KRH28469 | Soybean | nucleus, plastid | 21.79 | 32.84 |
| Zm00001d018179_P015 | Maize | nucleus | 33.5 | 32.65 |
| AT4G36970.1 | Thale cress | plastid | 22.6 | 32.55 |
| AT1G45207.2 | Thale cress | nucleus, plastid | 29.27 | 32.43 |
| Bra011737.1-P | Field mustard | nucleus, plastid | 22.44 | 32.39 |
| CDY17058 | Canola | nucleus, plastid | 26.83 | 32.04 |
| Bra014045.1-P | Field mustard | nucleus, plastid | 26.83 | 32.04 |
| CDX69276 | Canola | nucleus, plastid | 21.95 | 31.91 |
| CDY43217 | Canola | nucleus | 26.67 | 31.78 |
| CDY67768 | Canola | plastid | 13.66 | 30.32 |
Protein Annotations
| EnsemblPlants:Zm00001d020708_P001 | EnsemblPlants:Zm00001d020708_T001 | EnsemblPlantsGene:Zm00001d020708 | EntrezGene:100383499 | InterPro:Remorin_C | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF21 | PFAM:PF03763 | ProteinID:ONM55443.1 | ProteinID:ONM55444.1 | SEG:seg | UniParc:UPI0004DEBC1A |
| UniProt:A0A1D6I5R6 | MapMan:35.2 | : | : | : | : |
Description
Remorin family protein
Coordinates
chr7:+:129524403..129529382
Molecular Weight (calculated)
66410.3 Da
IEP (calculated)
9.327
GRAVY (calculated)
-0.700
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGGGASWL SFRGVVVEEE EAVVSAPEKP MRRGRRRWGA EVDDGYSPSS TGGGGSSCCD SFGCDSPLAG FVRPDGDPDT DLETDGLATS TSSASAAFTE
101: RQDDEAEEAL YGVKEEEWAQ IQEPAKNPAF RATPECHKQR YRTDAAVLLH GRKGSKQRPA SLDLGSPGFH GATFSPSFVI GGVGLMNKGL GASVIRSDVF
201: HSPGTPNYPR HRASVLGCHK GWSSERVPHP SKGNRRYPGS SMAFPYSNGR TLPSKWEDAE RWIFSPNSSD ALGRTTVAHA RRPKSKSGPL GPPGRLGGQY
301: SSVSSVSLLD NGRAGPITAN SPFAAGVLMP EHVCEGKSTN GTYSSRPIGN EINIGRGVKI CPLNGGSHPV RTSRVRQRLD YAVESSVSLP STQESVQDEQ
401: VEITEDSAST IASIISRKDA ATQTSPELSR SSSPNTRPTF NGSLSTEQVK EKGSCLSDLD IRDVQMDDRV TLTRWSKKNV TRSSNKNSTN IIEWSEKTVE
501: SKSSSWGFAK AKCISKIDRE DTEITAWENI EKAKADAAIQ KLVIKLEKKR SSSLDKILNT LKSAQRKSQV MHEHERDAVT ANQDGKGSRK AKKRAQLSKN
601: GQISSLSGCF TCHAF
101: RQDDEAEEAL YGVKEEEWAQ IQEPAKNPAF RATPECHKQR YRTDAAVLLH GRKGSKQRPA SLDLGSPGFH GATFSPSFVI GGVGLMNKGL GASVIRSDVF
201: HSPGTPNYPR HRASVLGCHK GWSSERVPHP SKGNRRYPGS SMAFPYSNGR TLPSKWEDAE RWIFSPNSSD ALGRTTVAHA RRPKSKSGPL GPPGRLGGQY
301: SSVSSVSLLD NGRAGPITAN SPFAAGVLMP EHVCEGKSTN GTYSSRPIGN EINIGRGVKI CPLNGGSHPV RTSRVRQRLD YAVESSVSLP STQESVQDEQ
401: VEITEDSAST IASIISRKDA ATQTSPELSR SSSPNTRPTF NGSLSTEQVK EKGSCLSDLD IRDVQMDDRV TLTRWSKKNV TRSSNKNSTN IIEWSEKTVE
501: SKSSSWGFAK AKCISKIDRE DTEITAWENI EKAKADAAIQ KLVIKLEKKR SSSLDKILNT LKSAQRKSQV MHEHERDAVT ANQDGKGSRK AKKRAQLSKN
601: GQISSLSGCF TCHAF
001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.