CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
plasma membrane 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23340_001	Banana	plastid	42.14	49.39
KRH66111	Soybean	nucleus	20.55	49.25
KRH15372	Soybean	nucleus	62.68	48.94
GSMUA_Achr5P05710_001	Banana	plastid	41.51	48.53
KRH05674	Soybean	nucleus	61.43	48.11
VIT_18s0001g10420.t01	Wine grape	nucleus	57.44	48.07
Zm00001d017576_P001	Maize	nucleus, plastid	8.18	45.88
Zm00001d020387_P001	Maize	nucleus, plastid	8.18	45.88
Zm00001d039978_P001	Maize	nucleus, plastid	7.97	44.71
Zm00001d019245_P001	Maize	nucleus	7.97	44.71
Solyc04g078810.2.1	Tomato	nucleus	53.46	44.12
PGSC0003DMT400020667	Potato	nucleus	53.46	44.04
PGSC0003DMT400020663	Potato	nucleus	43.61	40.55
Os02t0767000-01	Rice	nucleus	41.09	38.66
Bra014045.1-P	Field mustard	nucleus, plastid	41.72	38.64
CDY17058	Canola	nucleus, plastid	41.51	38.45
CDY43217	Canola	nucleus	41.3	38.18
KRH04616	Soybean	nucleus	32.29	37.56
KRH57952	Soybean	nucleus	32.08	36.96
AT1G45207.2	Thale cress	nucleus, plastid	42.98	36.94
GSMUA_Achr3P07010_001	Banana	nucleus	44.03	36.71
KRH77003	Soybean	nucleus, plastid	31.24	36.25
Zm00001d005881_P002	Maize	nucleus	28.09	35.83
KRH28469	Soybean	nucleus, plastid	30.61	35.78
Zm00001d010608_P001	Maize	nucleus	11.53	34.16
KXG31173	Sorghum	nucleus	41.72	34.08
TraesCS6A01G333200.1	Wheat	nucleus	40.46	33.68
Zm00001d052157_P006	Maize	plastid	40.04	33.1
TraesCS6B01G363600.1	Wheat	nucleus	39.83	32.37
HORVU6Hr1G080620.6	Barley	nucleus	40.67	31.65
Zm00001d020329_P001	Maize	plastid	11.74	30.11
Zm00001d018179_P015	Maize	nucleus	38.99	29.48
TraesCS5D01G244300.2	Wheat	nucleus	37.53	29.11
TraesCS5B01G235500.1	Wheat	nucleus	37.53	29.11
HORVU5Hr1G068200.5	Barley	nucleus	37.32	28.94
Os08t0471800-01	Rice	nucleus	36.27	28.74
TraesCS5A01G237300.2	Wheat	nucleus	37.32	28.62
KXG35763	Sorghum	nucleus	36.48	28.11
Os09t0456100-01	Rice	nucleus	36.27	27.9
Zm00001d020708_P001	Maize	cytosol	35.43	27.48
TraesCS6D01G312000.1	Wheat	nucleus, plastid	39.2	26.26
KXG25311	Sorghum	nucleus	33.54	25.81
Zm00001d050017_P001	Maize	nucleus	33.12	23.55

Protein Annotations

EMBL:ACUP02003402	EnsemblPlants:KRH52008	EnsemblPlantsGene:GLYMA_06G040700	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF13	PFAM:PF03763	ProteinID:KRH52008	ProteinID:KRH52008.1	SEG:seg	UniParc:UPI0002961EB9
UniProt:K7KT01	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:3054617..3059562

Molecular Weight (calculated)

51974.2 Da

IEP (calculated)

10.688

GRAVY (calculated)

-0.597

Length

477 amino acids

Sequence
(BLAST)

001: MAEVGFQERS SWRVGLRARY SSPDSVVFTL ESNLSLFSYA SASVDRCSFS SDSHDHDSFV SEISLDKAAS LDLNNASGSG SLPRLQTLKK TSISSRRSGT
101: ATFPSPGTLN YRVAMHKGWS SERVPLHAGA TRKHVLPFNN GKTLPSKWED AERWILSPVS ADGTGRASLN APQRRPKSKS GPLGPPGVAY HSMYSPAAPV
201: FEVGNGGSFM EGSPFTGDGL IICTGGHGGA LSVRTEPCMA RSASVHGCSK IQSQSSSMPL QEDKFGGFKD VGTNVSRATS RRDMATQMSP QGSSRSSPNL
301: RPSFSASTPS TLPVTELRTV GSSKVDIRDV QVDEHVTVTR WSKKHRALFT GRGSEKVESW KKELSTQSST WDVSETSKPA SKTRSEEAKI SAWENLQKAK
401: AEAAIRKLEM KLEKRRASSM DKIMNKLRLA QKKAQEMRSS VPHNQTDRVV RTSHKASSFL RTSQMRSLSG CFTCHVF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.