Factsheet for GSMUA_Achr3P07010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr8P30040_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	GSMUA_Achr11P...	AT4G15930.1	21798944
AT4G36970.1	GSMUA_Achr8P30040_001	AT4G15930.1	21798944
AT4G36970.1	GSMUA_AchrUn_...	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P05710_001	Banana	plastid	52.97	74.26
GSMUA_Achr8P23340_001	Banana	plastid	52.1	73.22
Os02t0767000-01	Rice	nucleus	46.68	52.66
VIT_07s0031g00610.t01	Wine grape	plastid	35.14	50.0
KXG31173	Sorghum	nucleus	46.85	45.89
TraesCS6A01G333200.1	Wheat	nucleus	45.8	45.72
Zm00001d052157_P006	Maize	plastid	45.98	45.58
TraesCS6B01G363600.1	Wheat	nucleus	46.15	44.97
VIT_18s0001g10420.t01	Wine grape	nucleus	44.76	44.91
KRH52008	Soybean	mitochondrion	36.71	44.03
KRH66111	Soybean	nucleus	15.21	43.72
PGSC0003DMT400010346	Potato	plastid	28.67	43.39
Solyc02g090900.2.1	Tomato	plastid	27.97	42.44
HORVU6Hr1G080620.6	Barley	nucleus	45.45	42.41
PGSC0003DMT400065490	Potato	nucleus	27.45	40.89
Zm00001d018179_P015	Maize	nucleus	44.76	40.57
KRH77003	Soybean	nucleus, plastid	28.67	39.9
Solyc02g064990.2.1	Tomato	nucleus	26.92	39.79
PGSC0003DMT400020667	Potato	nucleus	40.03	39.55
Solyc04g078810.2.1	Tomato	nucleus	39.86	39.45
KRH15372	Soybean	nucleus	41.96	39.28
KRH57952	Soybean	nucleus	28.15	38.89
KRH05674	Soybean	nucleus	41.26	38.75
KRH04616	Soybean	nucleus	27.45	38.29
KRH28469	Soybean	nucleus, plastid	26.92	37.75
PGSC0003DMT400020663	Potato	nucleus	33.39	37.23
Bra011737.1-P	Field mustard	nucleus, plastid	27.1	36.38
Bra014045.1-P	Field mustard	nucleus, plastid	32.69	36.31
AT4G36970.1	Thale cress	plastid	27.1	36.3
CDY17058	Canola	nucleus, plastid	32.52	36.12
CDY43217	Canola	nucleus	32.52	36.05
TraesCS6D01G312000.1	Wheat	nucleus, plastid	44.06	35.39
AT1G45207.2	Thale cress	nucleus, plastid	34.27	35.32
CDX75626	Canola	nucleus, plastid	26.22	35.13
CDX69276	Canola	nucleus, plastid	25.87	34.99
Bra017801.1-P	Field mustard	plastid	22.9	34.66
CDY42723	Canola	nucleus, plastid	23.25	33.5
CDY67768	Canola	plastid	14.69	30.32

Protein Annotations

EnsemblPlants:GSMUA_Achr3P07010_001	EnsemblPlants:GSMUA_Achr3T07010_001	EnsemblPlantsGene:GSMUA_Achr3G07010_001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF13	PFAM:PF03763	SEG:seg	UniParc:UPI000295C69B	UniProt:M0SCG8	MapMan:35.2

Description

remorin C-terminal domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G07010_001]

Coordinates

chr3:+:4713741..4720079

Molecular Weight (calculated)

61952.6 Da

IEP (calculated)

9.333

GRAVY (calculated)

-0.657

Length

572 amino acids

Sequence
(BLAST)

001: MNNKGFYEET HPHIKHKEQQ RRSVLHCSII LLPLPAAELV NCPIPESFSG LTVPSEDLEQ SGEEDEGKEE EEGEEEEEYL DPSKHSFSHA LRECQNRRCR
101: SEAVDLPGRK PQRPQQLLLD FHGQSADVSV LSPRFLAGGL TGMKKSSAAS SRSRSGTFPS PGTPNYGHGA GAAAFHKGWS SERVPLPTRS NRRYGGSGVL
201: LPFTNGRTLP SKWEDAERWI FSPVSGEGVG RSSVPPSHHR RPKSKSGPLG APAGVVGAYS SASPLVPCFD SSRVGNFAGN SPFMAGVLLT EHSFCGNDGR
301: GEGGGSGGRC TRRVGGGAEA HSADGGAYIV QSAGIHGWSD TLIESSSSVP SSRGIGQYEK FEGTRETAST VLASVLRKDM ATQMSPEGST PSSPKQGPSS
401: PSPDLVPCIE ELESHFSKLE VRDVQVDDRV TVTRWSKKHI ARGSGRCSAS IIEWKKKTVE ANTSAWEIAE TTKSISKYKR EEAKITAWEN LQKAKAEAEI
501: RKLEMKLEKK RSSSMVKILN KLRSAQKKAQ EMRSAVTANQ AIHTAKATKK GSYFRRSGQI SSLSGCFTCH AF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.