Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | CDY08148 | AT3G49580.1 | 21798944 |
| AT4G36970.1 | CDY24919 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | CDY57865 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75626 | Canola | nucleus, plastid | 78.72 | 77.99 |
| AT4G36970.1 | Thale cress | plastid | 69.98 | 69.32 |
| CDY42723 | Canola | nucleus, plastid | 60.52 | 64.48 |
| CDY67768 | Canola | plastid | 36.88 | 56.32 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 40.19 | 42.29 |
| Zm00001d020387_P001 | Maize | nucleus, plastid | 8.04 | 40.0 |
| Zm00001d017576_P001 | Maize | nucleus, plastid | 8.04 | 40.0 |
| Solyc02g090900.2.1 | Tomato | plastid | 34.75 | 38.99 |
| Zm00001d039978_P001 | Maize | nucleus, plastid | 7.8 | 38.82 |
| Zm00001d019245_P001 | Maize | nucleus | 7.8 | 38.82 |
| PGSC0003DMT400010346 | Potato | plastid | 34.04 | 38.1 |
| Solyc02g064990.2.1 | Tomato | nucleus | 34.75 | 37.98 |
| PGSC0003DMT400065490 | Potato | nucleus | 33.57 | 36.98 |
| GSMUA_Achr8P23340_001 | Banana | plastid | 35.22 | 36.61 |
| KRH77003 | Soybean | nucleus, plastid | 35.46 | 36.5 |
| KRH04616 | Soybean | nucleus | 34.75 | 35.85 |
| KRH28469 | Soybean | nucleus, plastid | 34.52 | 35.78 |
| KRH57952 | Soybean | nucleus | 34.52 | 35.27 |
| GSMUA_Achr5P05710_001 | Banana | plastid | 32.62 | 33.82 |
| Zm00001d010608_P001 | Maize | nucleus | 12.29 | 32.3 |
| Zm00001d005881_P002 | Maize | nucleus | 25.77 | 29.14 |
| Os02t0767000-01 | Rice | nucleus | 34.52 | 28.8 |
| Zm00001d020329_P001 | Maize | plastid | 12.53 | 28.49 |
| GSMUA_Achr3P07010_001 | Banana | nucleus | 34.99 | 25.87 |
| TraesCS6A01G333200.1 | Wheat | nucleus | 34.28 | 25.31 |
| CDY17058 | Canola | nucleus, plastid | 30.73 | 25.24 |
| CDY43217 | Canola | nucleus | 30.73 | 25.19 |
| KXG31173 | Sorghum | nucleus | 34.52 | 25.0 |
| TraesCS6B01G363600.1 | Wheat | nucleus | 34.04 | 24.53 |
| Zm00001d052157_P006 | Maize | plastid | 33.33 | 24.44 |
| HORVU6Hr1G080620.6 | Barley | nucleus | 34.04 | 23.49 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 33.57 | 23.09 |
| TraesCS5A01G237300.2 | Wheat | nucleus | 33.81 | 22.99 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 33.33 | 22.93 |
| TraesCS5B01G235500.1 | Wheat | nucleus | 33.33 | 22.93 |
| KXG35763 | Sorghum | nucleus | 33.33 | 22.78 |
| Os08t0471800-01 | Rice | nucleus | 32.39 | 22.76 |
| Os09t0456100-01 | Rice | nucleus | 33.1 | 22.58 |
| Zm00001d018179_P015 | Maize | nucleus | 32.86 | 22.03 |
| Zm00001d020708_P001 | Maize | cytosol | 31.91 | 21.95 |
| TraesCS6D01G312000.1 | Wheat | nucleus, plastid | 33.81 | 20.08 |
| KXG25311 | Sorghum | nucleus | 28.84 | 19.68 |
| Zm00001d050017_P001 | Maize | nucleus | 27.9 | 17.59 |
Protein Annotations
| EnsemblPlants:CDX69276 | EnsemblPlantsGene:GSBRNA2T00131096001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF2 |
| PFAM:PF03763 | ProteinID:CDX69276 | ProteinID:CDX69276.1 | SEG:seg | UniParc:UPI0004EEB459 | MapMan:35.2 |
Description
BnaC01g01770D
Coordinates
chrLK031789:+:3848143..3850025
Molecular Weight (calculated)
46295.8 Da
IEP (calculated)
10.434
GRAVY (calculated)
-0.753
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKTSLSSNS FGGFLSPGAA PSSYSDNKGW SSERVPHPSS SATASSTPTL NNGGPRRHLG SSSALTTPFY SGRAVPSKWE DAERWICSPV AACPNLSSQF
101: SEQRRQKSKS GPIVPPTLPH PPPYSPRLTM RAMEAPKGLM VSGSPFSTGV LEAERVFRGS VGGGGGHGHS RSWVDLMSEE TSSLSSKTDT EEKAEDRKER
201: EMQSPVVSRR DIATQMSPDN NPQELLSPPL VVSVIDEPPP PPPCRGGGEV REVKMDKGAK MIKRPKRRVM SSSSSRAIMR REEQPPEVED NSEASASSSS
301: WDISEPAMTL SKLQREEAKI AAWENLQKAK AEAAIRKLEV KLEKKKSASM DKILNKLQSA KLKAQEMRRS SVSVSSDHQQ EQQQVSSRNS VKITHLVRRH
401: TFMTPFMACF APRVDCRKSP SAL
101: SEQRRQKSKS GPIVPPTLPH PPPYSPRLTM RAMEAPKGLM VSGSPFSTGV LEAERVFRGS VGGGGGHGHS RSWVDLMSEE TSSLSSKTDT EEKAEDRKER
201: EMQSPVVSRR DIATQMSPDN NPQELLSPPL VVSVIDEPPP PPPCRGGGEV REVKMDKGAK MIKRPKRRVM SSSSSRAIMR REEQPPEVED NSEASASSSS
301: WDISEPAMTL SKLQREEAKI AAWENLQKAK AEAAIRKLEV KLEKKKSASM DKILNKLQSA KLKAQEMRRS SVSVSSDHQQ EQQQVSSRNS VKITHLVRRH
401: TFMTPFMACF APRVDCRKSP SAL
001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.