Factsheet for PGSC0003DMT400010346

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400029467
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT4G36970.1	PGSC0003DMT400029467	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090900.2.1	Tomato	plastid	84.39	84.62
PGSC0003DMT400065490	Potato	nucleus	63.23	62.24
VIT_07s0031g00610.t01	Wine grape	plastid	51.85	48.76
GSMUA_Achr8P23340_001	Banana	plastid	45.24	42.01
GSMUA_Achr5P05710_001	Banana	plastid	45.24	41.91
KRH77003	Soybean	nucleus, plastid	42.86	39.42
KRH28469	Soybean	nucleus, plastid	40.21	37.25
KRH57952	Soybean	nucleus	40.74	37.2
KRH04616	Soybean	nucleus	40.21	37.07
Bra017801.1-P	Field mustard	plastid	35.71	35.71
CDY42723	Canola	nucleus, plastid	37.04	35.26
AT4G36970.1	Thale cress	plastid	39.68	35.13
CDX75626	Canola	nucleus, plastid	39.68	35.13
Bra011737.1-P	Field mustard	nucleus, plastid	38.89	34.51
CDX69276	Canola	nucleus, plastid	38.1	34.04
Zm00001d019245_P001	Maize	nucleus	7.41	32.94
Zm00001d020387_P001	Maize	nucleus, plastid	7.41	32.94
Zm00001d017576_P001	Maize	nucleus, plastid	7.41	32.94
Zm00001d039978_P001	Maize	nucleus, plastid	7.14	31.76
Zm00001d005881_P002	Maize	nucleus	30.95	31.28
PGSC0003DMT400020667	Potato	nucleus	47.35	30.92
CDY67768	Canola	plastid	21.69	29.6
Os02t0767000-01	Rice	nucleus	39.68	29.59
PGSC0003DMT400020663	Potato	nucleus	39.68	29.24
GSMUA_Achr3P07010_001	Banana	nucleus	43.39	28.67
Zm00001d010608_P001	Maize	nucleus	11.38	26.71
KXG31173	Sorghum	nucleus	40.74	26.37
Zm00001d052157_P006	Maize	plastid	39.68	26.0
TraesCS6A01G333200.1	Wheat	nucleus	39.15	25.83
TraesCS6B01G363600.1	Wheat	nucleus	38.89	25.04
KXG35763	Sorghum	nucleus	39.68	24.23
Zm00001d020329_P001	Maize	plastid	11.9	24.19
HORVU6Hr1G080620.6	Barley	nucleus	38.89	23.98
Zm00001d018179_P015	Maize	nucleus	39.42	23.61
Os08t0471800-01	Rice	nucleus	37.57	23.59
Os09t0456100-01	Rice	nucleus	38.36	23.39
TraesCS5D01G244300.2	Wheat	nucleus	37.57	23.09
TraesCS5B01G235500.1	Wheat	nucleus	37.3	22.93
Zm00001d020708_P001	Maize	cytosol	37.3	22.93
HORVU5Hr1G068200.5	Barley	nucleus	37.04	22.76
TraesCS5A01G237300.2	Wheat	nucleus	37.3	22.67
TraesCS6D01G312000.1	Wheat	nucleus, plastid	38.62	20.51
KXG25311	Sorghum	nucleus	32.28	19.68
Zm00001d050017_P001	Maize	nucleus	32.01	18.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400010346	EnsemblPlantsGene:PGSC0003DMG400004040	EntrezGene:102591955	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF2	PFAM:PF03763	PGSC:PGSC0003DMG400004040	RefSeq:XP_006339895.1	SEG:seg	UniParc:UPI000296BBA4
UniProt:M0ZXW0	MapMan:35.2	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004040]

Coordinates

chr2:-:43793355..43796041

Molecular Weight (calculated)

41226.3 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.731

Length

378 amino acids

Sequence
(BLAST)

001: MKQNSTSLRN SGLYTSPATP EYGDNNVRGF QKGWSSERVP LPSNSGRRHI STTALMPFNS GRTVPSKWDD AERWITSPVS SYGPNAQTYR SPKSKSGPLG
101: APGLMYLPNY SPSVPVLESG GISNFIANSP FSTGVLVPDG VSIHYGAGGN SGGLYAQNSM ARATSAPGLS DLFSESSAPS SPDDDTKEPD SVSCGVLRRD
201: MATQMSSDSS THTSPQERSS SIPPGVEQSK QHATKVEIRD VQVDKGATIS GLSRKSRVRK PKKELPDVSE PISPWDVADG AKSMSKSQRE EARIAAWENL
301: QKAKAEAEIQ KLEMKLEKRR SASMDKILNK LRHAQVKAQD MRRATSESQP RRDSHRIIPF REYFKIASFG SCFVCRIP

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.