Factsheet for PGSC0003DMT400020667

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020663	Potato	nucleus	87.74	99.03
Solyc04g078810.2.1	Tomato	nucleus	95.51	95.67
VIT_18s0001g10420.t01	Wine grape	nucleus	64.42	65.44
KRH05674	Soybean	nucleus	58.72	55.83
KRH15372	Soybean	nucleus	57.86	54.83
KRH52008	Soybean	mitochondrion	44.04	53.46
GSMUA_Achr5P05710_001	Banana	plastid	35.58	50.49
GSMUA_Achr8P23340_001	Banana	plastid	35.23	50.12
Bra014045.1-P	Field mustard	nucleus, plastid	44.39	49.9
CDY17058	Canola	nucleus, plastid	44.39	49.9
AT1G45207.2	Thale cress	nucleus, plastid	46.98	49.01
CDY43217	Canola	nucleus	43.52	48.84
PGSC0003DMT400010346	Potato	plastid	30.92	47.35
PGSC0003DMT400065490	Potato	nucleus	30.05	45.31
Zm00001d020387_P001	Maize	nucleus, plastid	6.56	44.71
Zm00001d017576_P001	Maize	nucleus, plastid	6.56	44.71
Zm00001d039978_P001	Maize	nucleus, plastid	6.39	43.53
Zm00001d019245_P001	Maize	nucleus	6.39	43.53
Os02t0767000-01	Rice	nucleus	35.23	40.24
GSMUA_Achr3P07010_001	Banana	nucleus	39.55	40.03
Zm00001d005881_P002	Maize	nucleus	25.39	39.3
KXG31173	Sorghum	nucleus	38.0	37.67
TraesCS6A01G333200.1	Wheat	nucleus	37.13	37.52
TraesCS6B01G363600.1	Wheat	nucleus	36.96	36.46
Zm00001d052157_P006	Maize	plastid	36.27	36.4
Zm00001d010608_P001	Maize	nucleus	9.67	34.78
HORVU6Hr1G080620.6	Barley	nucleus	36.79	34.75
KXG35763	Sorghum	nucleus	36.44	34.09
Os08t0471800-01	Rice	nucleus	35.23	33.89
HORVU5Hr1G068200.5	Barley	nucleus	35.92	33.82
Os09t0456100-01	Rice	nucleus	35.92	33.55
TraesCS5B01G235500.1	Wheat	nucleus	35.58	33.5
Zm00001d020708_P001	Maize	cytosol	35.58	33.5
TraesCS5D01G244300.2	Wheat	nucleus	35.41	33.33
Zm00001d018179_P015	Maize	nucleus	36.1	33.12
TraesCS5A01G237300.2	Wheat	nucleus	35.58	33.12
KXG25311	Sorghum	nucleus	32.47	30.32
Zm00001d020329_P001	Maize	plastid	9.5	29.57
TraesCS6D01G312000.1	Wheat	nucleus, plastid	36.27	29.49
Zm00001d050017_P001	Maize	nucleus	32.82	28.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400020667	EnsemblPlantsGene:PGSC0003DMG402008010	EntrezGene:102593823	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF13	PFAM:PF03763	PGSC:PGSC0003DMG402008010	RefSeq:XP_006354871.1	SEG:seg	UniParc:UPI000295C462
UniProt:M1ADW9	MapMan:35.2	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402008010]

Coordinates

chr4:-:68096443..68101436

Molecular Weight (calculated)

63588.7 Da

IEP (calculated)

10.167

GRAVY (calculated)

-0.707

Length

579 amino acids

Sequence
(BLAST)

001: MPELGFQDSR SGLGFSRSVR DVSPDSVIYT GDSNFSIFSS ASGSVDRCSF ASDAHDQDSS VSDVSQQHLA GHECREASGG TVTDPNKTMV HRNSHLSRKE
101: KAKVQKAEKN SEIETEDENL SLDSARNSFS QALKECQDRR FGSGSLLKKP DRRRPASLDL NNAVINTCHS SSPRFGVMKK TPITTSRVGT FPSPRTPNYR
201: HSSVGVQKGW SSERVPLHSS ANRRQVNTAL LPYNNGRILP SKWEDAERWI FSPVSGDSSV KTSLQQPQRR PKSKSGPLGP PGQAYYSMYS PAPPVFKGGN
301: GGNLLANSPF STGVMTTDGL SIRCGGNLGS GNFHALAEPC MARSVSVHGC SELVCLSTLP MSQDESGDDI QDEANVVSRV ISRRDMATQM SPEASPSSSP
401: IRQSSFSPST PSILPLVELQ NVPSSKAEMR DVPIDERVTV TRWSKKQKAR IPGRSMELDD WKRKAMEIRS SGWDVSDTST SISKIKREEA RITAWENLQK
501: AKAEAAMRKL EMKLEKKRSS SMDKIMNKLR SAQKKAHEMR SSMLANQSHE VTRSSSKALS FRQTRQIGSL SGCFTCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.