Factsheet for Zm00001d052157_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008330_P001
Zm00001d040291_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Zm00001d008330_P001	AT4G15930.1	21798944
AT4G36970.1	Zm00001d040291_P001	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31173	Sorghum	nucleus	92.37	91.27
Os02t0767000-01	Rice	nucleus	70.19	79.88
Zm00001d018179_P015	Maize	nucleus	83.71	76.55
TraesCS6B01G363600.1	Wheat	nucleus	74.7	73.42
TraesCS6A01G333200.1	Wheat	nucleus	72.62	73.12
HORVU6Hr1G080620.6	Barley	nucleus	72.27	68.03
GSMUA_Achr8P23340_001	Banana	plastid	41.07	58.23
TraesCS6D01G312000.1	Wheat	nucleus, plastid	70.88	57.44
GSMUA_Achr5P05710_001	Banana	plastid	39.86	56.37
GSMUA_Achr3P07010_001	Banana	nucleus	45.58	45.98
VIT_07s0031g00610.t01	Wine grape	plastid	31.37	45.02
KRH66111	Soybean	nucleus	14.21	41.21
Zm00001d020387_P001	Maize	nucleus, plastid	6.07	41.18
Zm00001d017576_P001	Maize	nucleus, plastid	6.07	41.18
KRH52008	Soybean	mitochondrion	33.1	40.04
Zm00001d039978_P001	Maize	nucleus, plastid	5.89	40.0
Zm00001d019245_P001	Maize	nucleus	5.89	40.0
VIT_18s0001g10420.t01	Wine grape	nucleus	39.34	39.82
PGSC0003DMT400010346	Potato	plastid	26.0	39.68
PGSC0003DMT400065490	Potato	nucleus	26.17	39.32
Solyc02g064990.2.1	Tomato	nucleus	26.34	39.28
Solyc02g090900.2.1	Tomato	plastid	25.65	39.26
Zm00001d005881_P002	Maize	nucleus	25.3	39.04
KRH77003	Soybean	nucleus, plastid	27.56	38.69
KRH28469	Soybean	nucleus, plastid	27.04	38.24
KRH04616	Soybean	nucleus	26.86	37.8
KRH57952	Soybean	nucleus	26.86	37.44
KRH15372	Soybean	nucleus	38.47	36.33
PGSC0003DMT400020667	Potato	nucleus	36.4	36.27
Solyc04g078810.2.1	Tomato	nucleus	36.22	36.16
Bra017801.1-P	Field mustard	plastid	23.4	35.71
KRH05674	Soybean	nucleus	37.61	35.63
CDY42723	Canola	nucleus, plastid	23.74	34.51
PGSC0003DMT400020663	Potato	nucleus	30.68	34.5
Zm00001d020708_P001	Maize	cytosol	36.05	33.82
AT4G36970.1	Thale cress	plastid	24.96	33.72
CDX69276	Canola	nucleus, plastid	24.44	33.33
Zm00001d010608_P001	Maize	nucleus	9.19	32.92
Bra011737.1-P	Field mustard	nucleus, plastid	24.26	32.86
CDX75626	Canola	nucleus, plastid	24.26	32.79
CDY17058	Canola	nucleus, plastid	29.12	32.62
Bra014045.1-P	Field mustard	nucleus, plastid	28.94	32.43
CDY43217	Canola	nucleus	28.6	31.98
AT1G45207.2	Thale cress	nucleus, plastid	29.98	31.17
CDY67768	Canola	plastid	13.86	28.88
Zm00001d020329_P001	Maize	plastid	8.84	27.42
Zm00001d050017_P001	Maize	nucleus	29.98	25.78

Protein Annotations

EnsemblPlants:Zm00001d052157_P006	EnsemblPlants:Zm00001d052157_T006	EnsemblPlantsGene:Zm00001d052157	EntrezGene:100280272	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF13	PFAM:PF03763	ProteinID:AQK56371.1	ProteinID:AQK56374.1	ProteinID:AQK56376.1
SEG:seg	UniParc:UPI00022122DC	UniProt:K7U9T9	MapMan:35.2	:	:

Description

Remorin family protein

Coordinates

chr4:+:181466348..181472182

Molecular Weight (calculated)

62591.8 Da

IEP (calculated)

10.426

GRAVY (calculated)

-0.759

Length

577 amino acids

Sequence
(BLAST)

001: MPRPEPALGF PARASKPPPQ RRRKRQPPTR RRRPAGAAPV GPRGAADPDP AHSSALLPLP SGGSGFASRG TVAPDEEEGR DGASSAESEE VAKATNHSFS
101: HSVRECQKQR RLKSERSALA RPTALHELNS AGGVELLVLS PRCLIGNPGG MSKSSTTSSR SRSGTGTGTF PSPGTPNYNR HCAGSMQYSK GWSSERVPLG
201: TGSNRRYGGS GVVLPFNNGR KLPSKWEDAE KWILSPVSCD GMGRMSAPAP HHRRPKSKSG PLGHPAGIPG AYAAVSPLVP CFDGVLAEAN FAVHSPFSAG
301: VLIPEHGRIG DFSSGRGRCG DDGSSRSYSA EKEPYILRSA SIHAWTETLM EASAFANISE ETVQDDKLQG QTEATSNISS PIIKKDVGTQ MSPEDNIASP
401: PKARHSCSSL PSRHLIQEAN SHIPKPEIRD VQVDDQVTVT RWSRRHVTRG SDKRSTNIVE WRKKTVETRA PSFDEKEREG CMSKCKREEA KITAWENLQK
501: AKAEAAIRKL EMKLEKKRSS SMDRILGKLR SAQKKAHDMR SVVSYSEDHC GARTTKKTSF LVKTGKPFSC CFTYRAC

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.