CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17058	Canola	nucleus, plastid	96.71	96.89
AT1G45207.2	Thale cress	nucleus, plastid	72.09	67.03
VIT_18s0001g10420.t01	Wine grape	nucleus	53.68	48.6
Solyc04g078810.2.1	Tomato	nucleus	48.84	43.6
PGSC0003DMT400020667	Potato	nucleus	48.84	43.52
KRH05674	Soybean	nucleus	49.03	41.54
KRH52008	Soybean	mitochondrion	38.18	41.3
KRH15372	Soybean	nucleus	48.84	41.24
Zm00001d020387_P001	Maize	nucleus, plastid	6.78	41.18
Zm00001d017576_P001	Maize	nucleus, plastid	6.78	41.18
PGSC0003DMT400020663	Potato	nucleus	40.89	41.13
Zm00001d039978_P001	Maize	nucleus, plastid	6.59	40.0
Zm00001d019245_P001	Maize	nucleus	6.59	40.0
GSMUA_Achr5P05710_001	Banana	plastid	30.43	38.48
GSMUA_Achr8P23340_001	Banana	plastid	29.84	37.84
Os02t0767000-01	Rice	nucleus	32.36	32.94
GSMUA_Achr3P07010_001	Banana	nucleus	36.05	32.52
Zm00001d005881_P002	Maize	nucleus	23.26	32.09
CDY42723	Canola	nucleus, plastid	24.22	31.49
TraesCS6A01G333200.1	Wheat	nucleus	34.5	31.06
CDX75626	Canola	nucleus, plastid	25.58	30.91
CDX69276	Canola	nucleus, plastid	25.19	30.73
Zm00001d010608_P001	Maize	nucleus	9.5	30.43
TraesCS6B01G363600.1	Wheat	nucleus	34.5	30.32
HORVU6Hr1G080620.6	Barley	nucleus	34.11	28.71
Zm00001d052157_P006	Maize	plastid	31.98	28.6
KXG31173	Sorghum	nucleus	32.36	28.6
Zm00001d020329_P001	Maize	plastid	10.27	28.49
KXG35763	Sorghum	nucleus	33.14	27.63
Os08t0471800-01	Rice	nucleus	31.59	27.08
CDY67768	Canola	plastid	14.34	26.71
Zm00001d020708_P001	Maize	cytosol	31.78	26.67
Zm00001d018179_P015	Maize	nucleus	32.17	26.31
TraesCS5A01G237300.2	Wheat	nucleus	31.4	26.05
TraesCS5B01G235500.1	Wheat	nucleus	31.01	26.02
TraesCS5D01G244300.2	Wheat	nucleus	30.62	25.69
HORVU5Hr1G068200.5	Barley	nucleus	30.62	25.69
Os09t0456100-01	Rice	nucleus	30.81	25.65
KXG25311	Sorghum	nucleus	29.07	24.19
TraesCS6D01G312000.1	Wheat	nucleus, plastid	33.33	24.16
Zm00001d050017_P001	Maize	nucleus	29.65	22.8

Protein Annotations

EnsemblPlants:CDY43217	EnsemblPlantsGene:GSBRNA2T00076230001	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13
PFAM:PF03763	ProteinID:CDY43217	ProteinID:CDY43217.1	SEG:seg	UniParc:UPI0004EE31FF	UniProt:A0A078HZA5
MapMan:35.2	:	:	:	:	:

Description

BnaC08g04900DBnaC08g04900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZA5]

Coordinates

chrLK032549:+:38851..44525

Molecular Weight (calculated)

56887.8 Da

IEP (calculated)

10.390

GRAVY (calculated)

-0.763

Length

516 amino acids

Sequence
(BLAST)

001: MPSETQRPAR STASGGSQRD SSPDSLNFTP ESNLSLFSSA SVSVDRCSLT SDAHDRDSLL SAPSLERDQR VDPDKRETGC KNSRNSRKSI KVKAWKQECV
101: VNKEDEIQNL DSARSSFSVA LRECQERKSR SEAVAKMLDN QRATATTSLD LSKKTSVSTN KSSVFPSPGT PTYTMQKGWS SERVAIGRSP PNAAFLPLYS
201: GRTVPSKWED AERWILSPLA REEAARTSFT ASRRPKSKSG PLGPPGLAYY SLYSPAVPMV HGGNRGCLTS TSPFSARVLP QNGSTAFPQK TDHCMARSVS
301: IHGCSQTLAP QDDIHESIKD AAGDARAVSR RDMATQMSPE GSIRLSPERE CSLSSFSPTA RSIVELLNAR VNRAEAKDLQ VDEKVTVTRW SKRHRSLYHG
401: DSSNMRDHLH GQDRDPQGLT WVKTEEARII SWQNLQKAKA EAEIRKLEVK LEKKRSSSMA RIMRKVKSAE KKAEEMRRSV LDNQAPSASR GKALSFSRSG
501: KTKISSLSGC FTCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.