Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G175300.1 | |
| TraesCS3B01G205000.1 | |
| TraesCS3D01G180700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | TraesCS3A01G175300.1 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | TraesCS3B01G205000.1 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | TraesCS3D01G180700.1 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G235500.1 | Wheat | nucleus | 93.25 | 94.31 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 90.68 | 91.71 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 87.3 | 88.29 |
| Os09t0456100-01 | Rice | nucleus | 63.02 | 63.23 |
| Zm00001d005881_P002 | Maize | nucleus | 37.46 | 62.3 |
| KXG35763 | Sorghum | nucleus | 61.41 | 61.71 |
| Zm00001d020708_P001 | Maize | cytosol | 60.29 | 60.98 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 26.69 | 41.29 |
| VIT_18s0001g10420.t01 | Wine grape | nucleus | 35.37 | 38.6 |
| Solyc02g090900.2.1 | Tomato | plastid | 23.31 | 38.46 |
| Solyc02g064990.2.1 | Tomato | nucleus | 23.47 | 37.73 |
| KRH52008 | Soybean | mitochondrion | 28.62 | 37.32 |
| PGSC0003DMT400010346 | Potato | plastid | 22.67 | 37.3 |
| KRH57952 | Soybean | nucleus | 24.6 | 36.96 |
| KRH77003 | Soybean | nucleus, plastid | 23.95 | 36.25 |
| PGSC0003DMT400065490 | Potato | nucleus | 22.35 | 36.2 |
| KRH28469 | Soybean | nucleus, plastid | 23.63 | 36.03 |
| Solyc04g078810.2.1 | Tomato | nucleus | 33.44 | 35.99 |
| TraesCS6A01G333200.1 | Wheat | nucleus | 32.96 | 35.78 |
| KRH04616 | Soybean | nucleus | 23.47 | 35.61 |
| PGSC0003DMT400020667 | Potato | nucleus | 33.12 | 35.58 |
| KRH15372 | Soybean | nucleus | 34.73 | 35.35 |
| Bra017801.1-P | Field mustard | plastid | 21.38 | 35.19 |
| CDY42723 | Canola | nucleus, plastid | 22.35 | 35.01 |
| KRH66111 | Soybean | nucleus | 11.09 | 34.67 |
| KRH05674 | Soybean | nucleus | 33.12 | 33.83 |
| CDX69276 | Canola | nucleus, plastid | 22.99 | 33.81 |
| Bra011737.1-P | Field mustard | nucleus, plastid | 22.99 | 33.57 |
| PGSC0003DMT400020663 | Potato | nucleus | 27.65 | 33.53 |
| AT1G45207.2 | Thale cress | nucleus, plastid | 29.9 | 33.51 |
| CDX75626 | Canola | nucleus, plastid | 22.99 | 33.49 |
| AT4G36970.1 | Thale cress | plastid | 22.99 | 33.49 |
| Bra014045.1-P | Field mustard | nucleus, plastid | 26.37 | 31.84 |
| CDY17058 | Canola | nucleus, plastid | 26.21 | 31.65 |
| CDY67768 | Canola | plastid | 13.99 | 31.41 |
| CDY43217 | Canola | nucleus | 26.05 | 31.4 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G237300.2 | EnsemblPlantsGene:TraesCS5A01G237300 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF21 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:453003387..453007056
Molecular Weight (calculated)
66663.6 Da
IEP (calculated)
10.114
GRAVY (calculated)
-0.690
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGAGDCELE VRGVMGEQEE AASASASERA MRRRRGRRRW GRAGADDGYS TSSTGGRGGS SGSGSFGCDS PLAGFVRADG DMDTDLETDG LAATSSSSAS
101: ASAAFTEPHD DEEAQCGAKG EWQEPAKSPA GGATAIRECQ SQRRCRTEAV YLHGRKGLKQ RPASLDFGSA GFNSGTPFSP GFVVGGAGFA SKGLVSSQIS
201: SGVFPSPGTP SYPRRHRPSA LGYQKGWSSE RVPLPSKGNN TRRYPGSSMA FPLNSRRTLP SKWEDAERWI FSPKSNAGDA REKTATLPHA RRPKAKSGPL
301: GPPGRLGGQY SSVSSSVSLF DSGRVGHLAA NSPFLAGVLI PEHYGGAKSN VGRYTSGTAG DEFGIGIVGG SSLAHIGSPA MQSTMVRRRL DTAIESSASL
401: PSTQESVQGE EAEFVEDSAP IATPIISRKD TATQTSPDLS RSSSPSARPS FVRSFSMQQA KERESCFSDL EIRDVQMDER VSLTRWSKKH VTQASNKNST
501: NMLEWNKKTV DSKSSSWEST ETKCTLKVER EEAKLTAWEN LQKAKAEAAI QKLVMKLEKK RSFSLDRILN TLRSAQRKAQ GMRDAATASQ DEHLCRKAKK
601: TSHVTKNGQI RSLSGCFTCH AF
101: ASAAFTEPHD DEEAQCGAKG EWQEPAKSPA GGATAIRECQ SQRRCRTEAV YLHGRKGLKQ RPASLDFGSA GFNSGTPFSP GFVVGGAGFA SKGLVSSQIS
201: SGVFPSPGTP SYPRRHRPSA LGYQKGWSSE RVPLPSKGNN TRRYPGSSMA FPLNSRRTLP SKWEDAERWI FSPKSNAGDA REKTATLPHA RRPKAKSGPL
301: GPPGRLGGQY SSVSSSVSLF DSGRVGHLAA NSPFLAGVLI PEHYGGAKSN VGRYTSGTAG DEFGIGIVGG SSLAHIGSPA MQSTMVRRRL DTAIESSASL
401: PSTQESVQGE EAEFVEDSAP IATPIISRKD TATQTSPDLS RSSSPSARPS FVRSFSMQQA KERESCFSDL EIRDVQMDER VSLTRWSKKH VTQASNKNST
501: NMLEWNKKTV DSKSSSWEST ETKCTLKVER EEAKLTAWEN LQKAKAEAAI QKLVMKLEKK RSFSLDRILN TLRSAQRKAQ GMRDAATASQ DEHLCRKAKK
601: TSHVTKNGQI RSLSGCFTCH AF
001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.