Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36970.1 | CDY08148 | AT3G49580.1 | 21798944 |
| AT4G36970.1 | CDY24919 | AT4G15930.1 | 21798944 |
| AT4G36970.1 | CDY57865 | AT4G15930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42723 | Canola | nucleus, plastid | 80.51 | 56.17 |
| CDX69276 | Canola | nucleus, plastid | 56.32 | 36.88 |
| AT4G36970.1 | Thale cress | plastid | 56.68 | 36.77 |
| CDX75626 | Canola | nucleus, plastid | 54.51 | 35.36 |
| VIT_07s0031g00610.t01 | Wine grape | plastid | 35.02 | 24.13 |
| KRH04616 | Soybean | nucleus | 34.3 | 23.17 |
| KRH57952 | Soybean | nucleus | 33.94 | 22.71 |
| KRH77003 | Soybean | nucleus, plastid | 33.21 | 22.38 |
| Solyc02g090900.2.1 | Tomato | plastid | 29.6 | 21.75 |
| PGSC0003DMT400010346 | Potato | plastid | 29.6 | 21.69 |
| KRH28469 | Soybean | nucleus, plastid | 31.77 | 21.57 |
| PGSC0003DMT400065490 | Potato | nucleus | 28.52 | 20.57 |
| GSMUA_Achr5P05710_001 | Banana | plastid | 28.88 | 19.61 |
| Solyc02g064990.2.1 | Tomato | nucleus | 27.08 | 19.38 |
| GSMUA_Achr8P23340_001 | Banana | plastid | 27.8 | 18.92 |
| Os02t0767000-01 | Rice | nucleus | 29.6 | 16.17 |
| Zm00001d005881_P002 | Maize | nucleus | 20.58 | 15.24 |
| GSMUA_Achr3P07010_001 | Banana | nucleus | 30.32 | 14.69 |
| TraesCS6A01G333200.1 | Wheat | nucleus | 29.96 | 14.49 |
| CDY43217 | Canola | nucleus | 26.71 | 14.34 |
| HORVU5Hr1G068200.5 | Barley | nucleus | 31.77 | 14.31 |
| CDY17058 | Canola | nucleus, plastid | 26.35 | 14.17 |
| TraesCS6B01G363600.1 | Wheat | nucleus | 29.96 | 14.14 |
| Os09t0456100-01 | Rice | nucleus | 31.41 | 14.03 |
| TraesCS5A01G237300.2 | Wheat | nucleus | 31.41 | 13.99 |
| TraesCS5B01G235500.1 | Wheat | nucleus | 31.05 | 13.98 |
| TraesCS5D01G244300.2 | Wheat | nucleus | 31.05 | 13.98 |
| Zm00001d052157_P006 | Maize | plastid | 28.88 | 13.86 |
| KXG31173 | Sorghum | nucleus | 28.88 | 13.7 |
| Zm00001d020708_P001 | Maize | cytosol | 30.32 | 13.66 |
| KXG35763 | Sorghum | nucleus | 30.32 | 13.57 |
| HORVU6Hr1G080620.6 | Barley | nucleus | 29.96 | 13.54 |
| Os08t0471800-01 | Rice | nucleus | 29.24 | 13.46 |
| Zm00001d018179_P015 | Maize | nucleus | 29.24 | 12.84 |
| KXG25311 | Sorghum | nucleus | 26.35 | 11.77 |
| TraesCS6D01G312000.1 | Wheat | nucleus, plastid | 29.96 | 11.66 |
| Zm00001d050017_P001 | Maize | nucleus | 24.91 | 10.28 |
| Zm00001d020329_P001 | Maize | plastid | 6.86 | 10.22 |
| Zm00001d010608_P001 | Maize | nucleus | 3.97 | 6.83 |
| Zm00001d017576_P001 | Maize | nucleus, plastid | 0.0 | 0.0 |
| Zm00001d019245_P001 | Maize | nucleus | 0.0 | 0.0 |
| Zm00001d020387_P001 | Maize | nucleus, plastid | 0.0 | 0.0 |
| Zm00001d039978_P001 | Maize | nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY67768 | EnsemblPlantsGene:GSBRNA2T00066802001 | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF2 | ProteinID:CDY67768 | ProteinID:CDY67768.1 |
| SEG:seg | UniParc:UPI0004EE8C7A | UniProt:A0A078JJT7 | MapMan:35.2 | : | : |
Description
BnaCnng56300DBnaCnng56300D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JJT7]
Coordinates
chrLK036495:-:2..1075
Molecular Weight (calculated)
29958.2 Da
IEP (calculated)
10.295
GRAVY (calculated)
-0.748
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKTSVSSSS SSFGGFLSPG APPSYTDNNK GWSSERVPHP SSSSSTSTIN APRRRIGSAS ALTTPFYGGR GIPSKWEDAE RWICSPAVTT NPQRRQKSKS
101: GPIAPPPPAL PHPRMTMMMR AVEAPPQGNS KKGLMVVGSP FSTGVLEAER VFRGSVGGGH GHSQSCADLM SEEETSSLSS KTDTVYAEEK EEVITRRDIA
201: TQMTPNNNHH SPQELSVSVI EPPPCRVGGG EVREVKMDKG ARLIKHPKRR VMSSSSRIIR RDHQPEAEPN SASWDIS
101: GPIAPPPPAL PHPRMTMMMR AVEAPPQGNS KKGLMVVGSP FSTGVLEAER VFRGSVGGGH GHSQSCADLM SEEETSSLSS KTDTVYAEEK EEVITRRDIA
201: TQMTPNNNHH SPQELSVSVI EPPPCRVGGG EVREVKMDKG ARLIKHPKRR VMSSSSRIIR RDHQPEAEPN SASWDIS
001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.