Factsheet for Solyc02g090900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g066590.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT4G36970.1	Solyc01g066590.2.1	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010346	Potato	plastid	84.62	84.39
Solyc02g064990.2.1	Tomato	nucleus	62.33	60.72
VIT_07s0031g00610.t01	Wine grape	plastid	49.07	46.02
GSMUA_Achr8P23340_001	Banana	plastid	44.03	40.79
GSMUA_Achr5P05710_001	Banana	plastid	43.77	40.44
KRH77003	Soybean	nucleus, plastid	41.64	38.2
KRH57952	Soybean	nucleus	40.85	37.2
KRH04616	Soybean	nucleus	39.79	36.59
KRH28469	Soybean	nucleus, plastid	38.73	35.78
AT4G36970.1	Thale cress	plastid	39.79	35.13
CDX69276	Canola	nucleus, plastid	38.99	34.75
Bra011737.1-P	Field mustard	nucleus, plastid	38.99	34.51
CDX75626	Canola	nucleus, plastid	38.73	34.19
Zm00001d020387_P001	Maize	nucleus, plastid	7.69	34.12
Zm00001d019245_P001	Maize	nucleus	7.69	34.12
Zm00001d017576_P001	Maize	nucleus, plastid	7.69	34.12
Bra017801.1-P	Field mustard	plastid	33.95	33.86
CDY42723	Canola	nucleus, plastid	35.54	33.75
Zm00001d039978_P001	Maize	nucleus, plastid	7.43	32.94
Solyc04g078810.2.1	Tomato	nucleus	46.68	30.45
Zm00001d005881_P002	Maize	nucleus	29.44	29.68
CDY67768	Canola	plastid	21.75	29.6
Os02t0767000-01	Rice	nucleus	39.79	29.59
GSMUA_Achr3P07010_001	Banana	nucleus	42.44	27.97
Zm00001d010608_P001	Maize	nucleus	11.67	27.33
KXG31173	Sorghum	nucleus	40.85	26.37
TraesCS6A01G333200.1	Wheat	nucleus	39.79	26.18
Zm00001d052157_P006	Maize	plastid	39.26	25.65
TraesCS6B01G363600.1	Wheat	nucleus	39.52	25.38
Zm00001d020329_P001	Maize	plastid	12.47	25.27
HORVU6Hr1G080620.6	Barley	nucleus	39.52	24.31
TraesCS5B01G235500.1	Wheat	nucleus	38.73	23.74
Os08t0471800-01	Rice	nucleus	37.67	23.59
TraesCS5D01G244300.2	Wheat	nucleus	38.46	23.58
HORVU5Hr1G068200.5	Barley	nucleus	38.2	23.41
TraesCS5A01G237300.2	Wheat	nucleus	38.46	23.31
Zm00001d018179_P015	Maize	nucleus	38.99	23.3
KXG35763	Sorghum	nucleus	37.67	22.94
Os09t0456100-01	Rice	nucleus	37.4	22.74
Zm00001d020708_P001	Maize	cytosol	36.34	22.28
TraesCS6D01G312000.1	Wheat	nucleus, plastid	39.26	20.79
KXG25311	Sorghum	nucleus	31.3	19.03
Zm00001d050017_P001	Maize	nucleus	31.57	17.73

Protein Annotations

EnsemblPlants:Solyc02g090900.2.1	EnsemblPlantsGene:Solyc02g090900.2	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF2
PFAM:PF03763	SEG:seg	UniParc:UPI0002767602	UniProt:K4BCN9	MapMan:35.2	:

Description

No Description!

Coordinates

chr2:+:52382787..52385891

Molecular Weight (calculated)

41797.2 Da

IEP (calculated)

10.353

GRAVY (calculated)

-0.740

Length

377 amino acids

Sequence
(BLAST)

001: MKQNSTSLRN SGLYTSPATP EYGDNNVRGF QKGWSSERVP LPTNSGRRHI STTALMPFNS GRTVPSKWDD AERWITSPVS SYGVWRTPNA QTYRGPKSKS
101: GPLGPPGLMY LPNYSPSMPV LESGGISNFI ANSPFTTGVL VPDGVSIHYG AGEYAQNSMA RATSAPGLSD LFSESSVPSS PDDVTKEPDS ISFAVLRRDM
201: ATQMSSDDST HTSPQERSSS IPPGVEQSRQ HSTKVEIRDV QVDKGDPILG LSRKSRVRKP KKQLPDISSP ISTWDVVDGT KSMTKSQREE ARIAAWENLQ
301: KAKAEAEIQK LEMKLEKRRS ASMDKILNKL RHAQVKAQNM RRATSESQPR RDSHRIIPFR EYFKITSFSS CFVCRIP

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.