Factsheet for TraesCS5D01G244300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G175300.1
TraesCS3B01G205000.1
TraesCS3D01G180700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	TraesCS3A01G175300.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3B01G205000.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3D01G180700.1	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G235500.1	Wheat	nucleus	92.68	92.68
TraesCS5A01G237300.2	Wheat	nucleus	91.71	90.68
HORVU5Hr1G068200.5	Barley	nucleus	87.32	87.32
Os09t0456100-01	Rice	nucleus	63.9	63.39
Zm00001d005881_P002	Maize	nucleus	38.21	62.83
Zm00001d020708_P001	Maize	cytosol	62.11	62.11
KXG35763	Sorghum	nucleus	62.44	62.04
VIT_07s0031g00610.t01	Wine grape	plastid	26.99	41.29
Solyc02g090900.2.1	Tomato	plastid	23.58	38.46
VIT_18s0001g10420.t01	Wine grape	nucleus	35.28	38.07
Solyc02g064990.2.1	Tomato	nucleus	23.74	37.73
PGSC0003DMT400010346	Potato	plastid	23.09	37.57
KRH52008	Soybean	mitochondrion	29.11	37.53
KRH57952	Soybean	nucleus	24.88	36.96
KRH28469	Soybean	nucleus, plastid	24.23	36.52
KRH77003	Soybean	nucleus, plastid	24.39	36.5
KRH04616	Soybean	nucleus	24.23	36.34
PGSC0003DMT400065490	Potato	nucleus	22.6	36.2
KRH66111	Soybean	nucleus	11.71	36.18
Solyc04g078810.2.1	Tomato	nucleus	33.66	35.81
KRH15372	Soybean	nucleus	35.28	35.52
PGSC0003DMT400020667	Potato	nucleus	33.33	35.41
Bra017801.1-P	Field mustard	plastid	21.46	34.92
CDY42723	Canola	nucleus, plastid	22.28	34.51
KRH05674	Soybean	nucleus	33.98	34.32
AT4G36970.1	Thale cress	plastid	23.25	33.49
PGSC0003DMT400020663	Potato	nucleus	27.8	33.33
CDX69276	Canola	nucleus, plastid	22.93	33.33
Bra011737.1-P	Field mustard	nucleus, plastid	22.93	33.1
CDX75626	Canola	nucleus, plastid	22.93	33.02
AT1G45207.2	Thale cress	nucleus, plastid	29.27	32.43
CDY67768	Canola	plastid	13.98	31.05
Bra014045.1-P	Field mustard	nucleus, plastid	25.85	30.87
CDY17058	Canola	nucleus, plastid	25.69	30.68
CDY43217	Canola	nucleus	25.69	30.62
TraesCS6D01G312000.1	Wheat	nucleus, plastid	34.31	29.63

Protein Annotations

EnsemblPlants:TraesCS5D01G244300.2	EnsemblPlantsGene:TraesCS5D01G244300	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF21
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5D:+:352824244..352827869

Molecular Weight (calculated)

66240.9 Da

IEP (calculated)

9.999

GRAVY (calculated)

-0.718

Length

615 amino acids

Sequence
(BLAST)

001: MRGAGDCELE FRGVMGEEEE GAASASASAS ERAMRRRRGR RRWGRAEAGD GYSTSSGSGS FGCDSPLAGF VRADGDMDTD LETDGLAATS SSSASAAFTE
101: PHDDDEAQCG LKGEWQEPAK SPAGGATAIR ECQSQRRCRT EAVYLHGRKG LKQRPASLDF GSAGFNNGTP FSPGFVVGGA GFVSKGLVSS QISSGVFPSP
201: GTPSYPRRHR PSALGYQKGW SSERVPLPSK GNNTRRYPGS SMAFPLNNRR TLPSKWEDAE RWIFSPKSNS GDAREKTAAL PHARRPKAKS GPLGPPGRLG
301: GQYSSVSSSV SLFDSGRVGH LAANSPFLAG VLIPEHYGGA KSNVGRYTSG TAGAEFGIGI VGRSSLADIG SPATQSTTVR RRLDTAVESS ASLPSTQESV
401: QDEEAEFVED SAPTVTPITS RKDTATQTSP DLSRSSSPSA RPSFVRSFSM QQAKERESCF SDLEIRDVQM DERVSLTRWS KKHVTQGSNK NSTNMLEWNK
501: RTVDSKSSSW ESSETKCTIK VEREEAKLTA WENLQKAKAE AAIQKLVMKL EKKRSFSLDR ILNTLRSAQR KAQGMRDAAT ASQDEHLCRK AKKTSHVTKN
601: GQIRSLSGCF TCHAF

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.