CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH40946
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	KRH16959	AT3G49580.1	21798944
AT4G36970.1	KRH53667	AT3G49580.1	21798944
AT4G36970.1	KRH64261	AT3G49580.1	21798944
AT4G36970.1	KRH40946	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57952	Soybean	nucleus	80.98	80.19
KRH28469	Soybean	nucleus, plastid	49.02	49.26
KRH77003	Soybean	nucleus, plastid	48.05	47.93
VIT_07s0031g00610.t01	Wine grape	plastid	43.17	44.03
Zm00001d020387_P001	Maize	nucleus, plastid	8.54	41.18
Zm00001d017576_P001	Maize	nucleus, plastid	8.54	41.18
Zm00001d019245_P001	Maize	nucleus	8.54	41.18
PGSC0003DMT400065490	Potato	nucleus	38.29	40.89
Solyc02g064990.2.1	Tomato	nucleus	38.05	40.31
PGSC0003DMT400010346	Potato	plastid	37.07	40.21
Zm00001d039978_P001	Maize	nucleus, plastid	8.29	40.0
Solyc02g090900.2.1	Tomato	plastid	36.59	39.79
GSMUA_Achr8P23340_001	Banana	plastid	38.54	38.82
Bra017801.1-P	Field mustard	plastid	35.37	38.36
GSMUA_Achr5P05710_001	Banana	plastid	37.32	37.5
CDY42723	Canola	nucleus, plastid	35.37	36.52
AT4G36970.1	Thale cress	plastid	36.83	35.36
Bra011737.1-P	Field mustard	nucleus, plastid	36.34	34.98
CDX69276	Canola	nucleus, plastid	35.85	34.75
CDY67768	Canola	plastid	23.17	34.3
CDX75626	Canola	nucleus, plastid	35.37	33.96
Zm00001d005881_P002	Maize	nucleus	30.73	33.69
Zm00001d010608_P001	Maize	nucleus	13.17	33.54
KRH52008	Soybean	mitochondrion	37.56	32.29
KRH66111	Soybean	nucleus	15.12	31.16
Os02t0767000-01	Rice	nucleus	37.56	30.37
Zm00001d020329_P001	Maize	plastid	13.66	30.11
GSMUA_Achr3P07010_001	Banana	nucleus	38.29	27.45
TraesCS6A01G333200.1	Wheat	nucleus	38.05	27.23
KXG31173	Sorghum	nucleus	38.54	27.05
KRH15372	Soybean	nucleus	40.24	27.0
Zm00001d052157_P006	Maize	plastid	37.8	26.86
TraesCS6B01G363600.1	Wheat	nucleus	38.05	26.58
KRH05674	Soybean	nucleus	38.29	25.78
HORVU6Hr1G080620.6	Barley	nucleus	38.29	25.61
TraesCS5D01G244300.2	Wheat	nucleus	36.34	24.23
Os08t0471800-01	Rice	nucleus	35.37	24.09
KXG35763	Sorghum	nucleus	36.34	24.07
TraesCS5B01G235500.1	Wheat	nucleus	36.1	24.07
Zm00001d018179_P015	Maize	nucleus	36.83	23.93
Os09t0456100-01	Rice	nucleus	36.1	23.87
HORVU5Hr1G068200.5	Barley	nucleus	35.61	23.74
Zm00001d020708_P001	Maize	cytosol	35.37	23.58
TraesCS5A01G237300.2	Wheat	nucleus	35.61	23.47
TraesCS6D01G312000.1	Wheat	nucleus, plastid	38.05	21.91
KXG25311	Sorghum	nucleus	32.68	21.61
Zm00001d050017_P001	Maize	nucleus	31.46	19.23

Protein Annotations

EMBL:ACUP02010459	EnsemblPlants:KRH04616	EnsemblPlantsGene:GLYMA_17G174300	EntrezGene:100799649	InterPro:Remorin_C	ncoils:Coil
PANTHER:PTHR31471	PANTHER:PTHR31471:SF2	PFAM:PF03763	ProteinID:KRH04616	ProteinID:KRH04616.1	SEG:seg
UniParc:UPI000233F09B	UniProt:I1MVX6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:18110601..18114769

Molecular Weight (calculated)

45547.2 Da

IEP (calculated)

8.552

GRAVY (calculated)

-0.728

Length

410 amino acids

Sequence
(BLAST)

001: MKKSSSSSFQ NLGSFPSPGA PYYRERNIRS QKGWCSERVS NSKLSTSASS ISRRHTMAGL ITTPFCGGRT LPSKWDEAER WICSPVSAYA ESRSCSHAQL
101: QRRPKSISGP IVPPGVASFY SNQGLVVRNL VVGSPFSTGV LAPVAVSVHH FDAHDGNVFG YDLDSGMQFS RPGINENGVV LSSLSSAEPT CSEQPCDQSS
201: PISQDEKQGA MNEENVASHS SRCDKGTQMS LGEAENDSHS SPKSCATSVV EQQEWHSPKL EVRDVEVDSQ STIIRWSKRH ATKLPKKDTL HSKDSREIRE
301: EDQASWDIDE PNIDTSKLQR EEAKIIAWEN LQKAKAETAI RKLEMKLEKK RSSSMDKILN KLRRAQLKAE NMRSSLPVQQ GQEVSKCTVF SFSKYAQIWS
401: PTTCFRSHDQ

Best Arabidopsis Sequence Match ( AT4G36970.1 )
(BLAST)

001: MRKTSVSSNS FGGFLSPGAP SYADNKGWSS ERVPHPSSTT SSSAINGGRR HIGSSSALTT PFYSGRAIPS KWEDAERWIC SPVSTYPQGV CLNSSVSSEQ
101: RRQKSKSGPI VPPTLPHPHP TSSSSATGCY HYSPRMMMRS MDAPPKGLMV AGSPFSTGVL EADRVFRGSV GGGGCDGYGR GPGHGHSRSW VDLMSEETSS
201: LSSKTDTEEK AEMTTAMQSP VVSRRDMATQ MSPEETSPNN NNQSPPLVVS VIEPPPCRGE VREVKMDKGA RMIKRPKRRV MSSRIIRREQ PEVEDNSEAS
301: ASSSSWDISE PAMTLSKLQR EEAKIAAWEN LQKAKAEAAI RKLEVKLEKK KSASMDKILN KLQTAKIKAQ EMRRSSVSSE HEQQQGNHQI SRNSVKITHL
401: VRRHTFMTPF MTCFAPRVDC RKSSSAL

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:O23188]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.