Factsheet for TraesCS6D01G312000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G175300.1
TraesCS3B01G205000.1
TraesCS3D01G180700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	TraesCS3A01G175300.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3B01G205000.1	AT4G15930.1	21798944
AT4G36970.1	TraesCS3D01G180700.1	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G363600.1	Wheat	nucleus	71.21	86.37
TraesCS6A01G333200.1	Wheat	nucleus	68.12	84.64
Os02t0767000-01	Rice	nucleus	56.88	79.88
HORVU6Hr1G080620.6	Barley	nucleus	67.56	78.47
KXG31173	Sorghum	nucleus	58.43	71.23
Zm00001d052157_P006	Maize	plastid	57.44	70.88
Zm00001d018179_P015	Maize	nucleus	53.79	60.7
GSMUA_Achr8P23340_001	Banana	plastid	32.72	57.25
GSMUA_Achr5P05710_001	Banana	plastid	31.6	55.15
VIT_07s0031g00610.t01	Wine grape	plastid	25.84	45.77
GSMUA_Achr3P07010_001	Banana	nucleus	35.39	44.06
KRH66111	Soybean	nucleus	11.1	39.7
VIT_18s0001g10420.t01	Wine grape	nucleus	31.6	39.47
KRH77003	Soybean	nucleus, plastid	22.75	39.42
Solyc02g090900.2.1	Tomato	plastid	20.79	39.26
KRH52008	Soybean	mitochondrion	26.26	39.2
PGSC0003DMT400010346	Potato	plastid	20.51	38.62
PGSC0003DMT400065490	Potato	nucleus	20.65	38.28
Solyc02g064990.2.1	Tomato	nucleus	20.79	38.24
KRH28469	Soybean	nucleus, plastid	21.91	38.24
KRH04616	Soybean	nucleus	21.91	38.05
KRH57952	Soybean	nucleus	21.77	37.44
KRH15372	Soybean	nucleus	31.32	36.5
PGSC0003DMT400020667	Potato	nucleus	29.49	36.27
Solyc04g078810.2.1	Tomato	nucleus	29.35	36.16
KRH05674	Soybean	nucleus	30.34	35.47
Bra017801.1-P	Field mustard	plastid	18.68	35.19
PGSC0003DMT400020663	Potato	nucleus	25.14	34.89
TraesCS5D01G244300.2	Wheat	nucleus	29.63	34.31
CDY42723	Canola	nucleus, plastid	19.1	34.26
CDX69276	Canola	nucleus, plastid	20.08	33.81
CDY17058	Canola	nucleus, plastid	24.44	33.79
Bra014045.1-P	Field mustard	nucleus, plastid	24.44	33.79
AT4G36970.1	Thale cress	plastid	20.08	33.49
CDY43217	Canola	nucleus	24.16	33.33
Bra011737.1-P	Field mustard	nucleus, plastid	19.8	33.1
AT1G45207.2	Thale cress	nucleus, plastid	25.7	32.97
CDX75626	Canola	nucleus, plastid	19.66	32.79
CDY67768	Canola	plastid	11.66	29.96

Protein Annotations

EnsemblPlants:TraesCS6D01G312000.1	EnsemblPlantsGene:TraesCS6D01G312000	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13
PFAM:PF03763	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6D:-:421554767..421559824

Molecular Weight (calculated)

77159.6 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.606

Length

712 amino acids

Sequence
(BLAST)

001: MPRAAPGLGF PIAADPAPER RHPPSSRRKK PPPRRRRPAP PPPPAVKNLF PLSIPLPHRV RIAVPGRPLA GLFYCCESID PIQSTPPHMR AAEAPQLNFE
101: SRNPPRKQGI RPKEIRTGLP RRFSIIAGAF VPLRRLFSRP LFGGDCAVPC SVVLRPGFQF AERDAPFVWP LSQPPVGPRG AADPDPGLLH HLHPRGGSHA
201: TAPRDEDDGD EEEGGYDAAG LEEAAAGDSF SHSLKECQKQ LQLRAEARPA AAAHELGNGD AFGGIELLVL SPRCLLGAAV GGMSKSSTAS SRSRSGTFPS
301: PGTPNYHRHC PGNMQYPKGW SSERVPLGAG ANRRYGGSGV VLPFNNGRKL PSKWEDAEKW ILSPVSCDGM GRMSAPAPHH RRPKSKSGPL GHPAGVPGAY
401: ASVSPMIPCF DGVLAAANFA AHSPFSAGVL MPGHARNGDF SSGRARSGDD GSSRSYSAEK EPYIWRSAST HAWTETLMEA SAFAHISEEA AQDDVLQGPQ
501: GATPVISSPI IKKDVATQMS PDDSIISSSP KARHSCSSLP SGHAIRESNS HTPKVEVRDV QVDDQVTVTR WSKRHVTRGS DKRSTNIVEW RKKTTEARAP
601: SFDEKERERC ISKCKREEAK ITAWENLQKA KAEAAIRKLE MKLEKKRSLS MDRILGKLRS AQKKAEGMRT TVSVSEDQCA VSEDQCAVRA TKKASLRRTS
701: KPFSCCFTYH AC

Best Arabidopsis Sequence Match ( AT1G45207.2 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAAWKEEFE VKKDDESQNL DSARSSFSVA LRECQERRSR SEALAKKLDY QRTVSLDLSN VTSTSPRVVN VKRASVSTNK SSVFPSPGTP TYLHSMQKGW
201: SSERVPLRSN GGRSPPNAGF LPLYSGRTVP SKWEDAERWI VSPLAKEGAA RTSFGASHER RPKAKSGPLG PPGFAYYSLY SPAVPMVHGG NMGGLTASSP
301: FSAGVLPETV SSRGSTTAAF PQRIDPSMAR SVSIHGCSET LASSSQDDIH ESMKDAATDA QAVSRRDMAT QMSPEGSIRF SPERQCSFSP SSPSPLPISE
401: LLNAHSNRAE VKDLQVDEKV TVTRWSKKHR GLYHGNGSKM RDHVHGKATN HEDLTCATEE ARIISWENLQ KAKAEAAIRK LEKYFPQMKL EKKRSSSMEK
501: IMRKVKSAEK RAEEMRRSVL DNRVSTASHG KASSFKRSGK KKIPSLSGCF TCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.