Factsheet for PGSC0003DMT400020663

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020667	Potato	nucleus	99.03	87.74
Solyc04g078810.2.1	Tomato	nucleus	95.52	84.78
VIT_18s0001g10420.t01	Wine grape	nucleus	63.35	57.02
KRH05674	Soybean	nucleus	57.31	48.28
KRH15372	Soybean	nucleus	56.14	47.14
KRH52008	Soybean	mitochondrion	40.55	43.61
AT1G45207.2	Thale cress	nucleus, plastid	45.42	41.98
Bra014045.1-P	Field mustard	nucleus, plastid	41.91	41.75
CDY17058	Canola	nucleus, plastid	41.91	41.75
GSMUA_Achr5P05710_001	Banana	plastid	33.14	41.67
GSMUA_Achr8P23340_001	Banana	plastid	32.94	41.52
CDY43217	Canola	nucleus	41.13	40.89
PGSC0003DMT400010346	Potato	plastid	29.24	39.68
PGSC0003DMT400065490	Potato	nucleus	28.85	38.54
Os02t0767000-01	Rice	nucleus	33.92	34.32
GSMUA_Achr3P07010_001	Banana	nucleus	37.23	33.39
TraesCS6A01G333200.1	Wheat	nucleus	35.67	31.94
KXG31173	Sorghum	nucleus	36.06	31.68
TraesCS6B01G363600.1	Wheat	nucleus	35.48	31.01
Zm00001d052157_P006	Maize	plastid	34.5	30.68
Zm00001d005881_P002	Maize	nucleus	22.22	30.48
HORVU6Hr1G080620.6	Barley	nucleus	35.09	29.36
Os08t0471800-01	Rice	nucleus	34.11	29.07
Zm00001d018179_P015	Maize	nucleus	35.09	28.53
KXG35763	Sorghum	nucleus	34.31	28.43
HORVU5Hr1G068200.5	Barley	nucleus	33.72	28.13
Os09t0456100-01	Rice	nucleus	33.92	28.06
TraesCS5B01G235500.1	Wheat	nucleus	33.53	27.97
Zm00001d020708_P001	Maize	cytosol	33.53	27.97
TraesCS5D01G244300.2	Wheat	nucleus	33.33	27.8
TraesCS5A01G237300.2	Wheat	nucleus	33.53	27.65
KXG25311	Sorghum	nucleus	31.38	25.97
TraesCS6D01G312000.1	Wheat	nucleus, plastid	34.89	25.14
Zm00001d050017_P001	Maize	nucleus	31.38	23.99
Zm00001d010608_P001	Maize	nucleus	6.04	19.25
Zm00001d020329_P001	Maize	plastid	5.85	16.13
Zm00001d017576_P001	Maize	nucleus, plastid	2.53	15.29
Zm00001d019245_P001	Maize	nucleus	2.53	15.29
Zm00001d020387_P001	Maize	nucleus, plastid	2.53	15.29
Zm00001d039978_P001	Maize	nucleus, plastid	2.34	14.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400020663	EnsemblPlantsGene:PGSC0003DMG401008010	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471	PANTHER:PTHR31471:SF13
PFAM:PF03763	PGSC:PGSC0003DMG401008010	SEG:seg	UniParc:UPI0002961E7D	UniProt:M1ADW5	MapMan:35.2

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401008010]

Coordinates

chr4:-:68098258..68101233

Molecular Weight (calculated)

56012.5 Da

IEP (calculated)

9.538

GRAVY (calculated)

-0.674

Length

513 amino acids

Sequence
(BLAST)

001: MPELGFQDSR SGLGFSRSVR DVSPDSVIYT GDSNFSIFSS ASGSVDRCSF ASDAHDQDSS VSDVSQHLAG HECREASGGT VTDPNKTMVH RNSHLSRKEK
101: AKVQKAEKNS EIETEDENLS LDSARNSFSQ ALKECQDRRF GSGSLLKKPD RRRPASLDLN NAVINTCHSS SPRFGVMKKT PITTSRVGTF PSPRTPNYRH
201: SSVGVQKGWS SERVPLHSSA NRRQVNTALL PYNNGRILPS KWEDAERWIF SPVSGDSSVK TSLQQPQRRP KSKSGPLGPP GQAYYSMYSP APPVFKGGNG
301: GNLLANSPFS TGVMTTDGLS IRCGGNLGSG NFHALAEPCM ARSVSVHGCS ELVCLSTLPM SQDESGDDIQ DEANVVSRVI SRRDMATQMS PEASPSSSPI
401: RQSSFSPSTP SILPLVELQN VPSSKAEMRD VPIDERVTVT RWSKKQKARI PGRSMELDDW KRKAMEIRSS GWDVSDTSTS ISKIKREEAR ITAWENLQKA
501: KAEAAMRKLE VGL

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.