CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00507
OQU83188

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36970.1	EES00507	AT4G15930.1	21798944
AT4G36970.1	OQU83188	AT4G15930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052157_P006	Maize	plastid	91.27	92.37
Os02t0767000-01	Rice	nucleus	71.4	82.25
Zm00001d018179_P015	Maize	nucleus	85.96	79.56
TraesCS6A01G333200.1	Wheat	nucleus	73.46	74.87
TraesCS6B01G363600.1	Wheat	nucleus	75.17	74.79
HORVU6Hr1G080620.6	Barley	nucleus	72.77	69.33
GSMUA_Achr8P23340_001	Banana	plastid	41.61	59.71
TraesCS6D01G312000.1	Wheat	nucleus, plastid	71.23	58.43
GSMUA_Achr5P05710_001	Banana	plastid	40.41	57.84
GSMUA_Achr3P07010_001	Banana	nucleus	45.89	46.85
VIT_07s0031g00610.t01	Wine grape	plastid	31.51	45.77
KRH66111	Soybean	nucleus	14.55	42.71
KRH52008	Soybean	mitochondrion	34.08	41.72
VIT_18s0001g10420.t01	Wine grape	nucleus	40.07	41.05
Solyc02g090900.2.1	Tomato	plastid	26.37	40.85
PGSC0003DMT400010346	Potato	plastid	26.37	40.74
PGSC0003DMT400065490	Potato	nucleus	26.71	40.62
Solyc02g064990.2.1	Tomato	nucleus	26.88	40.57
KRH28469	Soybean	nucleus, plastid	27.57	39.46
KRH77003	Soybean	nucleus, plastid	27.74	39.42
KRH04616	Soybean	nucleus	27.05	38.54
PGSC0003DMT400020667	Potato	nucleus	37.67	38.0
KRH57952	Soybean	nucleus	26.88	37.92
Solyc04g078810.2.1	Tomato	nucleus	37.33	37.72
KRH15372	Soybean	nucleus	39.21	37.48
KRH05674	Soybean	nucleus	38.18	36.62
PGSC0003DMT400020663	Potato	nucleus	31.68	36.06
KXG35763	Sorghum	nucleus	37.84	35.7
Bra017801.1-P	Field mustard	plastid	22.95	35.45
CDX69276	Canola	nucleus, plastid	25.0	34.52
CDY42723	Canola	nucleus, plastid	23.46	34.51
AT4G36970.1	Thale cress	plastid	25.17	34.43
Bra011737.1-P	Field mustard	nucleus, plastid	24.66	33.8
CDX75626	Canola	nucleus, plastid	24.49	33.49
CDY17058	Canola	nucleus, plastid	29.11	33.01
Bra014045.1-P	Field mustard	nucleus, plastid	28.94	32.82
CDY43217	Canola	nucleus	28.6	32.36
AT1G45207.2	Thale cress	nucleus, plastid	30.48	32.07
CDY67768	Canola	plastid	13.7	28.88
KXG25311	Sorghum	nucleus	30.31	28.55

Protein Annotations

EnsemblPlants:KXG31173	EnsemblPlantsGene:SORBI_3004G309800	EntrezGene:8078924	InterPro:Remorin_C	ncoils:Coil	PANTHER:PTHR31471
PANTHER:PTHR31471:SF13	PFAM:PF03763	ProteinID:KXG31173	ProteinID:KXG31173.1	SEG:seg	unigene:Sbi.12078
UniParc:UPI0007F2EC3F	UniProt:A0A194YSF7	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:64676062..64680681

Molecular Weight (calculated)

63109.2 Da

IEP (calculated)

10.207

GRAVY (calculated)

-0.769

Length

584 amino acids

Sequence
(BLAST)

001: MPRPEPELGF PAAPTAPARA SKPPPERRRK KQPPTRRRRP PGAAPVGPGP RGAADPDPAH SSALLPFPSG GSGFASRGTV APDEEEGGDA ASSAESEEVA
101: EATNDSFSYS LRECQKQRRL KSERSALVRP PASHELNSAG GIELLVLSPR CLIGGNPGGM SKSSTTSSRS RSGTGTFPSP GTPNYNRHCA GSMQYSKGWS
201: SERVPLGTGS NRRYGGSGVV LPFNNGRKLP SKWEDAEKWI LSPVSCDGMG RMSAPAPHHR RPKSKSGPLG HPAGIPGAYA AVSPLVPCFD GVLAAANFAA
301: HSPFSAGVLI PEHGRIGDFS SGRGRCGDDG SSRSYSAEKE PYILRSASIH AWTETLMEAS AFANISEETV QDDKLQGQTE ETSMISSPII KKDVGTQMSP
401: EDSISSSPKA RHSCSSLPSG HLIKEANSHI HKPEIRDVQV DDQVTVTRWS KRHVTRGSDK RSTNIVEWRK KTVETRAPSF DEKERERCMS KCKREEAKIT
501: AWENLQKAKA EAAIRKLEMK LEKKRSSSMD KILGKLRSAQ KKAQDMRSVV SSSEDQCSTR TTKKKSSFVK TGKPFSCCFT YRAC

Best Arabidopsis Sequence Match ( AT1G45207.3 )
(BLAST)

001: MPSESSYKVH RPAKSGGSRR DSSPDSIIFT PESNLSLFSS ASVSVDRCSS TSDAHDRDDS LISGPSLERD QRVSSSCKDL DLDKRGTGWK NSCNSRKSNK
101: VKAWKEEFEV KKDDESQNLD SARSSFSVAL RECQERRSRS EALAKKLDYQ RTVSLDLSNV TSTSPRVVNV KRASVSTNKS SVFPSPGTPT YLHSMQKGWS
201: SERVPLRSNG GRSPPNAGFL PLYSGRTVPS KWEDAERWIV SPLAKEGAAR TSFGASHERR PKAKSGPLGP PGFAYYSLYS PAVPMVHGGN MGGLTASSPF
301: SAGVLPETVS SRGSTTAAFP QRIDPSMARS VSIHGCSETL ASSSQDDIHE SMKDAATDAQ AVSRRDMATQ MSPEGSIRFS PERQCSFSPS SPSPLPISEL
401: LNAHSNRAEV KDLQVDEKVT VTRWSKKHRG LYHGNGSKMR DHVHGKATNH EDLTCATEEA RIISWENLQK AKAEAAIRKL EMKLEKKRSS SMEKIMRKVK
501: SAEKRAEEMR RSVLDNRVST ASHGKASSFK RSGKKKIPSL SGCFTCHVF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4HRB5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.